# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	2.663	d.129.3.2	41321
2f2lX	167	7.242	d.118.1.1	132844
1r7aA	504	15.36	b.71.1.1,c.1.8.1	97192,97193
1louA	101	17.24	d.58.14.1	39323
1avqA	228	19.41	c.52.1.13	33326
1gvhA	396	19.53	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1vp2A	208	19.64	c.51.4.1	113933
2h8gA	267	19.77		
1pdqA	72	20.64	b.34.13.2	94590
2qqrA	118	24.06		
1pfbA	55	29.92	b.34.13.2	94655
3chvA	284	30.62		
1xu1R	42	31.11	g.24.1.2	116036
2opkA	112	32.69		
1vqoK	132	34.67	b.39.1.1	120372
1mhnA	59	34.68	b.34.9.1	84964
1kmkA	406	37.64	c.67.1.3	68696
2f2lA	167	41.27	d.118.1.1	132843
1ohtA	215	41.43	d.118.1.1	87036
1ok0A	74	42.18	b.5.1.1	93191
1hoe	74	43.35		
1b8oA	284	43.96	c.56.2.1	33762
3b34A	891	48.30		
1cqmA	101	48.91	d.58.14.1	39321
2huhA	147	52.81		
1wznA	252	53.94	c.66.1.43	121525
2oasA	436	54.08		
2ouxA	286	54.80		
2fmmA	74	55.19	b.34.13.2	133782
1z9nA	177	58.27		
1q3lA	69	58.35	b.34.13.2	111652
2rkqA	169	58.46		
1vqoA	240	59.21	b.34.5.3,b.40.4.5	120361,120362
2aqpA	164	60.38		
1w5rA	278	63.76	d.3.1.5	120643
2o0rA	411	63.99		
1vk1A	242	64.61	d.268.1.2	108634
2arcA	164	67.04	b.82.4.1	28148
2v1rA	80	69.76		
1dl2A	511	69.82	a.102.2.1	18844
3bh0A	315	70.81		
2q16A	219	71.91		
1yadA	221	74.90		
1sxrA	183	75.30	d.118.1.1	106101
1qstA	160	77.02	d.108.1.1	40804
2g39A	497	80.59	c.124.1.2,c.124.1.2	134553,134554
1zjrA	211	80.81		
1zc1A	208	80.88		
2b2yA	187	81.17	b.34.13.2,b.34.13.2	127754,127755
1danU	121	81.40	b.1.2.1	21954
1ypxA	375	82.13		
1tib	269	82.63		
2qg7A	458	83.16		
1y6kR	214	87.27	b.1.2.1,b.1.2.1	122663,122664
3cfuA	159	89.03