# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1em2A 229 0.3662 d.129.3.2 41321 1r7aA 504 1.024 b.71.1.1,c.1.8.1 97192,97193 2h8gA 267 1.159 1mhnA 59 3.135 b.34.9.1 84964 2qqrA 118 3.262 1vqoK 132 3.683 b.39.1.1 120372 2psoA 237 4.111 1lcyA 325 4.659 b.36.1.4,b.47.1.1 73834,73835 2hbwA 235 5.080 1xu1R 42 6.003 g.24.1.2 116036 2hc8A 113 6.045 2o0rA 411 6.169 2opkA 112 6.855 1q3lA 69 9.040 b.34.13.2 111652 1xr4A 509 9.136 c.124.1.2,c.124.1.2 115860,115861 3c1aA 315 9.429 2gduA 504 9.432 b.71.1.1,c.1.8.1 135032,135033 1b8oA 284 10.45 c.56.2.1 33762 1avqA 228 10.96 c.52.1.13 33326 1hoe 74 11.44 1jhfA 202 11.83 a.4.5.2,b.87.1.1 63057,63058 1at0 145 12.50 1pdqA 72 12.80 b.34.13.2 94590 1ybyA 215 13.44 1vqoA 240 14.88 b.34.5.3,b.40.4.5 120361,120362 1ok0A 74 15.16 b.5.1.1 93191 2gfaA 119 15.28 b.34.9.1,b.34.9.1 135089,135090 1pfbA 55 15.39 b.34.13.2 94655 2g3rA 123 16.25 b.34.9.1,b.34.9.1 134570,134571 2bsxA 253 17.21 c.56.2.1 129128 2evrA 246 18.85 b.34.11.3,d.3.1.16 132440,132441 3c2qA 345 19.47 2r55A 231 19.91 1kmkA 406 20.08 c.67.1.3 68696 1msoB 30 20.46 g.1.1.1 85092 1am2A 199 20.91 b.86.1.2 28381 1louA 101 21.32 d.58.14.1 39323 1q1gA 276 21.60 c.56.2.1 95574 2hftA 218 22.05 b.1.2.1,b.1.2.1 21951,21952 2bsaA 303 23.48 b.43.4.2,c.25.1.1 129078,129079 2a28A 54 24.17 2c6qA 351 24.67 2ee1A 64 24.75 1rl2A 137 25.40 b.34.5.3,b.40.4.5 24610,25342 1at0A 145 25.63 b.86.1.1 28374 2bjrA 368 25.70 b.169.1.1,b.169.1.1 128628,128629 2e5yA 133 25.86 2eveA 157 26.23 b.122.1.8 132427 2yyoA 171 26.84 1mi8A 158 27.10 b.86.1.2 91279 1ae9A 179 27.59 d.163.1.1 42153 1wznA 252 27.94 c.66.1.43 121525 1gvhA 396 28.23 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1wgsA 133 29.61 b.34.13.3 114622 2oq0A 206 29.89 1vp2A 208 29.89 c.51.4.1 113933 3chvA 284 30.41 1w7cA 747 31.86 1wkrA 340 32.44 b.50.1.2 109395 2a8yA 270 34.46 2ekdA 207 34.95 2ivwA 113 34.95 1fdr 248 35.02 1k0wA 231 35.52 c.74.1.1 77220 1iz6A 138 36.10 b.34.5.2,b.40.4.5 76976,76977 2oh5A 248 37.00 1xcbA 211 39.27 a.4.5.38,c.2.1.12 109552,109553 1z85A 234 39.79 2p3yA 491 41.11 1nlnA 204 41.49 d.3.1.7 91962 2pth 193 41.53 1c4rA 182 43.01 b.29.1.4 24229 2yrvA 117 46.05 2jm1A 141 46.08 2qdxA 257 46.66 1w5rA 278 46.73 d.3.1.5 120643 1qstA 160 46.97 d.108.1.1 40804 2c5uA 375 47.06 1wleA 501 47.73 1ypfA 336 48.52 2qe7H 135 49.51 2e63A 170 49.67 2b2yA 187 49.97 b.34.13.2,b.34.13.2 127754,127755 1a8pA 258 50.58 b.43.4.2,c.25.1.1 25654,31544 2fnjA 226 50.95 b.29.1.22 133818 3b46A 447 51.14 2fhdA 153 51.54 1z9zA 60 52.48 1c5cH 215 53.08 b.1.1.1,b.1.1.2 20475,21439 2nvgA 141 53.36 1edgA 380 53.94 c.1.8.3 28807 2hd9A 145 54.33 2dy8A 69 54.53 b.34.13.2 131892 1cqmA 101 55.19 d.58.14.1 39321 2oqeA 660 55.24 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1xniA 118 55.65 b.34.9.1,b.34.9.1 115582,115583 1fjjA 159 56.01 b.17.1.2 59852 1y9lA 115 56.23 1v7lA 163 56.47 c.8.2.1 113562 1w1kA 560 57.90 d.58.32.1,d.145.1.1 109059,109060 1xi9A 406 59.11 c.67.1.1 115355 1yn8A 59 60.42 1ppjE 196 60.53 b.33.1.1,f.23.12.1 104260,104261 1g8lA 411 62.39 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2egvA 229 62.74 2pthA 193 63.27 c.56.3.1 33793 1sotA 320 64.75 b.36.1.4,b.47.1.1 105852,105853 1wmmA 145 65.90 b.122.1.8 121049 2i8aA 252 66.32 1t5yA 190 66.43 b.122.1.1,d.17.6.3 106495,106496 2p0pA 126 66.65 1yqvL 211 67.32 b.1.1.1,b.1.1.2 123900,123901 2fug5 207 67.48 1zosA 230 67.84 3b3qE 197 68.02 2hl5C 97 68.13 2or0A 414 71.19 2jbrA 422 71.58 1avpA 204 71.60 d.3.1.7 37132 2bkdN 134 71.99 1zc1A 208 72.11 1zq1A 438 73.24 b.38.3.1,c.88.1.1 125489,125490 1f5fA 205 73.56 b.29.1.4 24222 1d2oA 187 75.00 b.3.5.1,b.3.5.1 22625,22626 1ou8A 111 75.26 b.136.1.1 93543 1w34A 304 76.93 b.43.4.2,c.25.1.1 120620,120621 2vqeQ 105 77.32 2bgiA 272 77.98 2et1A 201 78.18 b.82.1.2 132351 1bco 327 78.82 1t0qC 86 79.19 d.15.12.1 106222 3c5tA 122 79.54 1fjgQ 105 80.29 b.40.4.5 25352 1yvcA 70 80.42 b.40.4.12 124094 2vt8A 153 80.65 1dl2A 511 82.72 a.102.2.1 18844 1danU 121 82.93 b.1.2.1 21954 2aqpA 164 83.23 2bu3A 254 83.81 d.3.1.14 129167 2j2zA 218 84.43 b.1.11.1,b.7.2.1 137974,137975 2bjqA 345 85.23 b.169.1.1,b.169.1.1 128626,128627 1jv1A 505 85.58 c.68.1.5 71892 1dnlA 199 86.00 b.45.1.1 25753 1zuuA 58 86.14 b.34.2.1 125688 1vhzA 198 86.16 d.113.1.1 100718 1hxvA 113 86.76 d.26.1.1 71089 1d2fA 390 87.16 c.67.1.3 34411 1i07A 60 88.02 b.34.2.1 61477