# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	3.058	d.129.3.2	41321
1r7aA	504	5.122	b.71.1.1,c.1.8.1	97192,97193
1avqA	228	14.47	c.52.1.13	33326
1vp2A	208	15.97	c.51.4.1	113933
1louA	101	21.17	d.58.14.1	39323
2h8gA	267	24.93		
2f2lX	167	27.14	d.118.1.1	132844
1xu1R	42	27.92	g.24.1.2	116036
3chvA	284	28.32		
3bh0A	315	29.88		
1pfbA	55	32.69	b.34.13.2	94655
1hoe	74	34.56		
1kmkA	406	35.15	c.67.1.3	68696
1ok0A	74	35.28	b.5.1.1	93191
2ouxA	286	35.32		
1cqmA	101	40.83	d.58.14.1	39321
1pdqA	72	40.94	b.34.13.2	94590
2gduA	504	41.53	b.71.1.1,c.1.8.1	135032,135033
1gvhA	396	42.23	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2opkA	112	42.87		
1x3qA	57	49.22	b.34.13.2	121669
2fnjA	226	49.45	b.29.1.22	133818
1vqoK	132	50.35	b.39.1.1	120372
2yvyA	278	50.49		
1edgA	380	53.18	c.1.8.3	28807
2rkqA	169	58.22		
1vk1A	242	58.48	d.268.1.2	108634
1vqoA	240	58.56	b.34.5.3,b.40.4.5	120361,120362
1b8oA	284	58.94	c.56.2.1	33762
2qqrA	118	59.39		
2huhA	147	59.69		
2o0rA	411	68.71		
1q3lA	69	73.23	b.34.13.2	111652
2fmmA	74	78.27	b.34.13.2	133782
1mhnA	59	78.63	b.34.9.1	84964
1rl2A	137	81.04	b.34.5.3,b.40.4.5	24610,25342
2gfgA	193	82.04