# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	3.336	d.129.3.2	41321
1r7aA	504	3.661	b.71.1.1,c.1.8.1	97192,97193
1avqA	228	9.502	c.52.1.13	33326
1vp2A	208	9.682	c.51.4.1	113933
2f2lX	167	16.45	d.118.1.1	132844
3chvA	284	22.07		
1louA	101	24.95	d.58.14.1	39323
3bh0A	315	27.09		
1kmkA	406	27.70	c.67.1.3	68696
1xu1R	42	27.71	g.24.1.2	116036
2gduA	504	31.05	b.71.1.1,c.1.8.1	135032,135033
2qqrA	118	31.24		
2h8gA	267	34.84		
2fnjA	226	38.06	b.29.1.22	133818
2ouxA	286	38.38		
1vqoK	132	43.29	b.39.1.1	120372
1gvhA	396	43.47	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2rkqA	169	43.87		
1mhnA	59	45.10	b.34.9.1	84964
1zjrA	211	46.13		
1hoe	74	47.51		
1vqoA	240	47.73	b.34.5.3,b.40.4.5	120361,120362
2aqpA	164	49.58		
1pfbA	55	51.37	b.34.13.2	94655
1x3qA	57	52.15	b.34.13.2	121669
1ok0A	74	52.24	b.5.1.1	93191
1ohtA	215	54.29	d.118.1.1	87036
2yvyA	278	54.51		
2opkA	112	56.07		
1cqmA	101	56.53	d.58.14.1	39321
1b8oA	284	56.55	c.56.2.1	33762
1pdqA	72	58.52	b.34.13.2	94590
2arcA	164	58.74	b.82.4.1	28148
2huhA	147	60.15		
1edgA	380	60.47	c.1.8.3	28807
1z9nA	177	62.52		
1w5rA	278	64.28	d.3.1.5	120643
1yadA	221	64.82		
2o0rA	411	65.70		
2eryA	172	71.27	c.37.1.8	132306
2q16A	219	75.77		
2yyoA	171	78.54		
1wznA	252	88.91	c.66.1.43	121525
1vk1A	242	88.99	d.268.1.2	108634