# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	2.155	d.129.3.2	41321
1r7aA	504	7.079	b.71.1.1,c.1.8.1	97192,97193
1vp2A	208	8.067	c.51.4.1	113933
1avqA	228	14.14	c.52.1.13	33326
2h8gA	267	15.55		
3chvA	284	24.98		
1louA	101	26.50	d.58.14.1	39323
1xu1R	42	26.80	g.24.1.2	116036
2f2lX	167	27.70	d.118.1.1	132844
1kmkA	406	33.93	c.67.1.3	68696
2ouxA	286	38.12		
1gvhA	396	39.17	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2qqrA	118	39.48		
1vqoA	240	41.27	b.34.5.3,b.40.4.5	120361,120362
1vqoK	132	41.34	b.39.1.1	120372
2aqpA	164	44.13		
1hoe	74	45.46		
1cqmA	101	45.95	d.58.14.1	39321
1ok0A	74	46.21	b.5.1.1	93191
2rkqA	169	47.31		
1b8oA	284	48.34	c.56.2.1	33762
2opkA	112	49.90		
1pfbA	55	52.09	b.34.13.2	94655
1mhnA	59	52.71	b.34.9.1	84964
1z9nA	177	52.97		
2fnjA	226	53.70	b.29.1.22	133818
1pdqA	72	54.96	b.34.13.2	94590
2q16A	219	57.60		
2gduA	504	57.91	b.71.1.1,c.1.8.1	135032,135033
3bh0A	315	58.45		
2o0rA	411	58.63		
1x3qA	57	59.90	b.34.13.2	121669
1ohtA	215	62.23	d.118.1.1	87036
2yvyA	278	69.24		
2aqqA	164	71.18		
1w5rA	278	71.64	d.3.1.5	120643
2arcA	164	72.41	b.82.4.1	28148
1yaiA	151	72.79	b.1.8.1	22289
1edgA	380	76.61	c.1.8.3	28807
1yadA	221	76.66		
2r55A	231	76.67		
2huhA	147	80.20		
1rl2A	137	85.22	b.34.5.3,b.40.4.5	24610,25342
1lshA	1056	89.40	a.118.4.1,f.7.1.1,f.7.1.1	74242,74243,74244
2aq4A	434	89.59