# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ouxA	286	12.86		
2yvyA	278	24.08		
1dk8A	147	25.71	a.91.1.1	18548
2dyqA	144	32.49		
1gd1O	334	48.05	c.2.1.3,d.81.1.1	29962,39877
1em2A	229	53.62	d.129.3.2	41321
1pdqA	72	55.90	b.34.13.2	94590
2fmmA	74	55.94	b.34.13.2	133782
1xr4A	509	56.21	c.124.1.2,c.124.1.2	115860,115861
1gd7A	109	60.39	b.40.4.4	60441
2b2yA	187	60.40	b.34.13.2,b.34.13.2	127754,127755
2nr3A	183	60.85		
1wleA	501	62.99		
1u8fO	335	63.90	c.2.1.3,d.81.1.1	119626,119627
2hbwA	235	64.13		
3bz6A	183	70.14		
3bh0A	315	80.56