# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	2.763	d.129.3.2	41321
1r7aA	504	6.178	b.71.1.1,c.1.8.1	97192,97193
1vp2A	208	11.44	c.51.4.1	113933
1gvhA	396	14.82	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2f2lX	167	16.12	d.118.1.1	132844
2h8gA	267	16.46		
1avqA	228	18.66	c.52.1.13	33326
1xu1R	42	19.68	g.24.1.2	116036
1ohtA	215	22.18	d.118.1.1	87036
1pfbA	55	25.23	b.34.13.2	94655
3chvA	284	25.47		
1louA	101	31.58	d.58.14.1	39323
2o0rA	411	33.52		
1mhnA	59	34.86	b.34.9.1	84964
1qwdA	177	35.78	b.60.1.1	96471
2qqrA	118	37.74		
2opkA	112	38.93		
1pdqA	72	39.64	b.34.13.2	94590
1q3lA	69	39.88	b.34.13.2	111652
1kmkA	406	43.18	c.67.1.3	68696
1vk1A	242	44.35	d.268.1.2	108634
2f2lA	167	44.41	d.118.1.1	132843
1qstA	160	44.55	d.108.1.1	40804
1b8oA	284	45.20	c.56.2.1	33762
2q16A	219	46.63		
2ouxA	286	47.18		
1vqoK	132	48.04	b.39.1.1	120372
2pzmA	330	51.52		
1y6kR	214	52.48	b.1.2.1,b.1.2.1	122663,122664
2rkqA	169	53.06		
1zjrA	211	57.72		
1wznA	252	57.76	c.66.1.43	121525
3besR	250	58.96		
1x3qA	57	60.51	b.34.13.2	121669
3bh0A	315	60.88		
1sxrA	183	63.96	d.118.1.1	106101
2huhA	147	66.31		
2fmmA	74	67.55	b.34.13.2	133782
2fnjA	226	67.63	b.29.1.22	133818
2r55A	231	68.55		
2bjrA	368	70.70	b.169.1.1,b.169.1.1	128628,128629
1lcyA	325	71.54	b.36.1.4,b.47.1.1	73834,73835
2gecA	139	71.80	b.148.1.1	135059
1yadA	221	73.34		
1dl2A	511	74.48	a.102.2.1	18844
2gduA	504	77.08	b.71.1.1,c.1.8.1	135032,135033
1cqmA	101	77.86	d.58.14.1	39321
1hoe	74	78.21		
3cx5B	352	79.37		
2psoA	237	80.55		
1ok0A	74	81.00	b.5.1.1	93191
1w5rA	278	84.30	d.3.1.5	120643
2arcA	164	86.59	b.82.4.1	28148
1xcbA	211	87.68	a.4.5.38,c.2.1.12	109552,109553
1w7cA	747	88.00