# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1c4kA 730 1.362 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1hjxA 362 3.402 c.1.8.5,d.26.3.1 83512,83513 1a8dA 452 3.506 b.29.1.6,b.42.4.2 24262,25607 2vgaA 207 3.880 1em2A 229 4.692 d.129.3.2 41321 1z9nA 177 5.130 2h8gA 267 5.248 1i8aA 189 7.441 b.1.9.2 61951 2qg7A 458 7.554 1vf8A 377 11.60 c.1.8.5,d.26.3.1 120029,120030 2pzmA 330 11.76 2aqpA 164 13.59 2psoA 237 14.14 2f2lX 167 14.37 d.118.1.1 132844 1wb0A 445 14.98 c.1.8.5,d.26.3.1 120825,120826 1j32A 388 15.28 c.67.1.1 77067 2hu5A 582 15.51 b.69.7.2,c.69.1.33 136763,136764 1h09A 338 16.97 b.109.1.1,c.1.8.8 83420,83421 1vp2A 208 17.66 c.51.4.1 113933 1qhoA 686 18.30 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1vffA 423 18.74 c.1.8.4 120033 1lba 146 19.00 2h5gA 463 19.27 2drhA 361 21.24 2p3yA 491 22.43 2douA 376 23.42 2q16A 219 24.09 1lbaA 146 24.45 d.118.1.1 41062 2vokA 188 26.83 1zcjA 463 28.02 1wkrA 340 28.11 b.50.1.2 109395 2h2tB 175 28.51 1v2dA 381 28.81 c.67.1.1 108281 2icyA 469 28.87 b.81.1.4,c.68.1.5 137257,137258 1zjaA 557 30.05 2piaA 321 31.91 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1ecfA 504 32.26 c.61.1.1,d.153.1.1 34053,41820 2f2lA 167 33.62 d.118.1.1 132843 1sat 471 33.74 1louA 101 35.10 d.58.14.1 39323 1qbgA 272 35.93 c.23.5.3 31227 2hbwA 235 36.47 2aqqA 164 38.47 1pdqA 72 39.85 b.34.13.2 94590 2fxqA 264 41.48 1r77A 103 41.57 2raaA 204 42.35 2c1xA 456 43.51 1jvbA 347 43.83 b.35.1.2,c.2.1.1 77181,77182 1amuA 563 45.49 e.23.1.1 43351 1m15A 357 45.76 a.83.1.1,d.128.1.2 78368,78369 2uubD 209 46.14 d.66.1.2 139935 3chvA 284 46.74 2gecA 139 47.04 b.148.1.1 135059 1pfbA 55 48.35 b.34.13.2 94655 1aroL 151 48.72 d.118.1.1 41063 2b78A 385 49.93 b.122.1.9,c.66.1.51 128025,128026 1w9pA 433 50.09 c.1.8.5,d.26.3.1 114412,114413 2v9lA 274 50.75 1u69A 163 51.55 d.32.1.7 107699 1avqA 228 51.61 c.52.1.13 33326 3cz8A 319 51.89 1xu1R 42 52.72 g.24.1.2 116036 2arcA 164 54.26 b.82.4.1 28148 1ew2A 513 54.65 c.76.1.1 59525 1tib 269 55.01 1e7uA 961 55.89 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2rkqA 169 55.98 1xdpA 687 56.37 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 3b3qE 197 57.62 2qqrA 118 57.97 1d8cA 723 58.42 c.1.13.1 29325 1pamA 686 58.86 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1owqA 361 59.51 c.1.8.5,d.26.3.1 104041,104042 1q3lA 69 59.81 b.34.13.2 111652 1zhpA 238 60.22 1danU 121 60.31 b.1.2.1 21954 2evrA 246 62.45 b.34.11.3,d.3.1.16 132440,132441 1cqmA 101 62.71 d.58.14.1 39321 1juhA 350 63.72 b.82.1.5 71884 2ek6A 95 64.15 3bmvA 683 64.32 1sxrA 183 64.73 d.118.1.1 106101 2opkA 112 64.87 3bcwA 123 65.56 1dmmA 131 67.38 d.17.4.3 38114 1wdaA 670 68.05 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 2py5A 575 68.99 2hqxA 246 73.02 b.34.9.1 136675 1y6kR 214 73.21 b.1.2.1,b.1.2.1 122663,122664 1yu4A 381 73.38 b.163.1.1,d.169.1.8 124033,124034 1ub4A 110 73.70 b.34.6.2 88399 1y9uA 323 74.85 c.94.1.1 116594 1k7kA 221 75.06 c.51.4.1 72104 2e5vA 472 75.37 3besR 250 75.44 2gw3A 225 76.07 1xtlA 175 76.53 1t17A 148 80.02 d.129.3.6 112215 2b4rO 345 80.09 c.2.1.3,d.81.1.1 127845,127846 2qkiC 343 81.38 1mhnA 59 81.73 b.34.9.1 84964 2ovsA 118 82.24 2ze0A 555 85.91 2j6lA 500 87.18 1h2kA 349 88.14 b.82.2.6 76572