# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	2.554	d.129.3.2	41321
1r7aA	504	3.436	b.71.1.1,c.1.8.1	97192,97193
1avqA	228	7.954	c.52.1.13	33326
1vp2A	208	17.43	c.51.4.1	113933
2h8gA	267	17.77		
3chvA	284	18.47		
1xu1R	42	23.06	g.24.1.2	116036
1vqoK	132	26.05	b.39.1.1	120372
1edgA	380	28.98	c.1.8.3	28807
1xr4A	509	28.98	c.124.1.2,c.124.1.2	115860,115861
1mhnA	59	29.52	b.34.9.1	84964
1louA	101	32.40	d.58.14.1	39323
1vk1A	242	34.16	d.268.1.2	108634
2arcA	164	35.68	b.82.4.1	28148
2opkA	112	38.12		
3bh0A	315	41.55		
2f2lX	167	43.70	d.118.1.1	132844
2qqrA	118	44.22		
2gduA	504	45.90	b.71.1.1,c.1.8.1	135032,135033
2aqpA	164	47.45		
2o0rA	411	47.77		
1f5fA	205	48.25	b.29.1.4	24222
2psoA	237	50.60		
2fnjA	226	51.47	b.29.1.22	133818
1nlnA	204	53.36	d.3.1.7	91962
1y6kR	214	54.63	b.1.2.1,b.1.2.1	122663,122664
1pfbA	55	55.84	b.34.13.2	94655
1b8oA	284	61.55	c.56.2.1	33762
1gvhA	396	61.92	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1vqoA	240	61.96	b.34.5.3,b.40.4.5	120361,120362
1yadA	221	63.93		
1cqmA	101	64.95	d.58.14.1	39321
2pzmA	330	66.90		
1zc1A	208	67.26		
2hftA	218	67.58	b.1.2.1,b.1.2.1	21951,21952
1pdqA	72	68.72	b.34.13.2	94590
1ok0A	74	69.35	b.5.1.1	93191
1w7cA	747	70.54		
1danU	121	71.72	b.1.2.1	21954
1z9nA	177	72.07		
3brnA	157	75.33		
1hoe	74	78.39		
1lcyA	325	79.06	b.36.1.4,b.47.1.1	73834,73835
1dl2A	511	79.61	a.102.2.1	18844
2nyiA	195	80.64		
2q16A	219	83.07		
1kmkA	406	83.30	c.67.1.3	68696
2bsxA	253	83.82	c.56.2.1	129128
1x3qA	57	88.20	b.34.13.2	121669
2ouxA	286	88.36