# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1fzqA	181	5.520	c.37.1.8	32060
1mr3F	181	8.053	c.37.1.8	79422
1kshA	186	12.75	c.37.1.8	72914
1gd1O	334	13.11	c.2.1.3,d.81.1.1	29962,39877
1uptA	171	13.12	c.37.1.8	99767
1hurA	180	14.88	c.37.1.8	32052
2gicA	422	15.22	a.260.1.1	135227
1ybdA	239	16.75	c.73.1.3	122884
1em2A	229	18.56	d.129.3.2	41321
2ouxA	286	18.72		
1gadO	330	20.68	c.2.1.3,d.81.1.1	29950,39865
2bneA	241	23.79	c.73.1.3	128824
1o3yA	166	24.36	c.37.1.8	86618
2dyqA	144	24.88		
1xg4A	295	27.18		
2eryA	172	27.32	c.37.1.8	132306
1ok0A	74	27.64	b.5.1.1	93191
1wfyA	104	29.77	d.15.1.5	114597
1hoe	74	30.36		
2dk5A	91	32.04		
2raaA	204	32.32		
1vz0A	230	34.95	a.4.14.1,d.268.1.1	108929,108930
2qqrA	118	36.39		
1ppjE	196	36.69	b.33.1.1,f.23.12.1	104260,104261
1obfO	335	38.27	c.2.1.3,d.81.1.1	86768,86769
1u8fO	335	39.58	c.2.1.3,d.81.1.1	119626,119627
1a62A	130	41.95	a.140.3.1,b.40.4.5	64708,64709
1r7aA	504	42.02	b.71.1.1,c.1.8.1	97192,97193
1jssA	224	42.84	d.129.3.2	71844
1i4mA	108	44.16	d.6.1.1	66025
2psoA	237	44.73		
2nr3A	183	47.06		
2r55A	231	48.85		
1lba	146	49.15		
1dssG	333	49.20	c.2.1.3,d.81.1.1	30022,39937
3bz6A	183	49.93		
1xr4A	509	53.54	c.124.1.2,c.124.1.2	115860,115861
1r8sA	164	54.06	c.37.1.8	97247
2pzmA	330	54.16		
2b4rO	345	55.22	c.2.1.3,d.81.1.1	127845,127846
1c3gA	170	55.80	b.4.1.1,b.4.1.1	22831,22832
1yadA	221	58.52		
1x1rA	178	60.60	c.37.1.8	121595
2g82A	331	61.61	c.2.1.3,d.81.1.1	134746,134747
2aqqA	164	61.68		
2yvyA	278	62.53		
3bh0A	315	63.44		
1ub4A	110	63.98	b.34.6.2	88399
2yrvA	117	70.69		
1dl2A	511	72.12	a.102.2.1	18844
1div	149	73.25		
2oq0A	206	75.08		
2a1fA	247	77.46	c.73.1.3	125991
2p4dA	172	81.54		
1wekA	217	81.63	c.129.1.1	114553
2bjrA	368	83.27	b.169.1.1,b.169.1.1	128628,128629
2f2lX	167	84.51	d.118.1.1	132844
2ra8A	362	84.53		
2gecA	139	86.08	b.148.1.1	135059
2aqpA	164	86.30		
1eonA	245	87.15	c.52.1.2	33238