# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3b9tA 484 1.294 1l1jA 239 2.705 b.47.1.1 84516 2bemA 170 3.361 b.1.18.2 116698 1mi8A 158 5.001 b.86.1.2 91279 1sawA 225 5.353 d.177.1.1 112050 2cwpA 112 7.360 1kl9A 182 10.17 a.60.14.1,b.40.4.5 111574,111575 1nkqA 259 10.75 d.177.1.1 103862 1q46A 175 11.25 a.60.14.1,b.40.4.5 111594,111595 1yvcA 70 12.43 b.40.4.12 124094 2fhdA 153 14.08 2pn8A 211 14.26 1kzlA 208 15.20 b.43.4.3,b.43.4.3 77635,77636 2a28A 54 18.11 2f4eA 180 19.08 2oqkA 117 20.90 1ylnA 252 22.63 b.45.2.1,b.45.2.2 123657,123658 2r39A 118 24.38 1y0bA 197 24.63 c.61.1.1 122476 1wkbA 810 27.59 2q18X 293 30.13 2v1rA 80 31.24 2ak5A 64 31.26 2ii1A 301 32.24 2bkdN 134 32.46 1y8tA 324 33.08 b.36.1.4,b.47.1.1 122763,122764 1jxpA 186 33.35 b.47.1.3 26402 1bco 327 33.54 1xvqA 175 33.89 c.47.1.10 116094 1gd7A 109 35.92 b.40.4.4 60441 1lcyA 325 35.98 b.36.1.4,b.47.1.1 73834,73835 1wzoA 246 36.69 1at0 145 37.05 2ckkA 127 40.10 1sv6A 269 40.26 d.177.1.1 106043 2g3rA 123 41.63 b.34.9.1,b.34.9.1 134570,134571 1wfyA 104 42.38 d.15.1.5 114597 1oebA 62 42.81 b.34.2.1 86909 1shfA 59 43.33 b.34.2.1 24462 1bdoA 80 43.44 b.84.1.1 28214 2hqxA 246 48.40 b.34.9.1 136675 2cvbA 188 48.90 c.47.1.10 130859 2o88A 58 48.91 1gttA 429 48.96 d.177.1.1,d.177.1.1 70529,70530 2bz8A 58 49.14 1am2A 199 49.89 b.86.1.2 28381 1sotA 320 50.07 b.36.1.4,b.47.1.1 105852,105853 1bb9A 115 50.28 b.34.2.1 24554 2q2iA 116 50.65 1a0nB 69 51.86 b.34.2.1 24469 1kngA 156 52.86 c.47.1.10 72777 2b7kA 200 53.21 c.47.1.10 128042 1fd9A 213 54.52 d.26.1.1 59771 2cy9A 140 56.78 d.38.1.5 131019 1wdiA 345 56.98 e.53.1.1 114535 1semA 58 57.10 b.34.2.1 24544 2yyoA 171 57.23 1bbzA 58 57.42 b.34.2.1 24477 2drmA 58 57.99 1l3aA 228 58.73 d.18.1.2 73531 1bdo 80 59.19 2dcvA 42 59.46 1utiA 58 61.61 b.34.2.1 99962 1yezA 68 62.48 b.40.4.12 123026 1u06A 62 63.29 b.34.2.1 119404 1aboA 62 63.31 b.34.2.1 24474 2rdeA 251 64.01 1bcoA 327 64.17 b.48.1.1,c.55.3.3 26431,33676 1x6mA 196 64.31 b.88.1.4 114920 1sgpE 185 67.34 b.47.1.1 25816 1l7lA 121 67.77 b.18.1.16 77790 1at0A 145 68.56 b.86.1.1 28374 2raaA 204 68.98 2qggA 182 69.24 2eb4A 267 69.42 2f8mA 244 69.72 1i8dA 213 70.33 b.43.4.3,b.43.4.3 61953,61954 2j6fA 62 71.31 2agyA 361 71.73 2a19A 175 72.99 2pu9B 74 73.11 1uj0A 62 73.67 b.34.2.1 99449 1ckaA 57 74.13 b.34.2.1 24459 1a49A 530 75.23 b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 1h9mA 145 75.83 b.40.6.2,b.40.6.2 60833,60834 1q6uA 245 77.67 d.26.1.1 95998 2c0dA 221 78.13 2do3A 69 78.38 b.34.5.5 131596 1hh2P 344 82.78 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1yn4A 99 83.70 2dbnA 461 84.58 1wyxA 69 84.68 2mcmA 112 85.49 b.1.7.1 22207 1ootA 60 86.22 b.34.2.1 93386 2o31A 67 86.43 2bx2L 517 88.08 1ghj 79 88.53 1go3E 187 88.84 b.40.4.5,d.230.1.1 83054,83055 1am2 199 89.39 3c0cA 73 89.95