# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.1151 b.34.9.1 84964 1wgsA 133 0.1203 b.34.13.3 114622 1g5vA 88 0.2315 b.34.9.1 60292 2gfaA 119 0.2923 b.34.9.1,b.34.9.1 135089,135090 1vqoK 132 0.4714 b.39.1.1 120372 2eqkA 85 0.9209 1rkiA 102 1.156 d.308.1.2 118776 1zc1A 208 2.080 2hqxA 246 2.483 b.34.9.1 136675 1jfxA 217 2.698 c.1.8.8 62943 1pz7A 204 2.812 b.29.1.4 95405 1f5fA 205 3.914 b.29.1.4 24222 1ssfA 156 3.951 b.34.9.1,b.34.9.1 105982,105983 1xniA 118 4.661 b.34.9.1,b.34.9.1 115582,115583 1ecxA 384 4.790 c.67.1.3 34431 1zoyB 252 5.048 1v6zA 228 5.244 b.122.1.2,c.116.1.5 113551,113552 1vhyA 257 5.628 b.122.1.2,c.116.1.5 100714,100715 1c4rA 182 6.107 b.29.1.4 24229 1sk4A 163 6.475 d.118.1.1 105664 2qqrA 118 6.595 2bjrA 368 8.020 b.169.1.1,b.169.1.1 128628,128629 2aynA 404 8.023 d.3.1.9 127563 1h30A 422 9.030 b.29.1.4,b.29.1.4 76604,76605 1x89A 178 9.056 b.60.1.1 121799 1x1iA 752 9.272 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2f5kA 102 9.547 b.34.13.3 132995 2ofzA 138 9.753 1fd9A 213 10.74 d.26.1.1 59771 1k12A 158 11.53 b.18.1.15 71978 2egvA 229 12.13 1wmvA 54 13.26 1qtnB 95 13.76 2cwzA 141 13.90 d.38.1.7 130961 2bjqA 345 14.09 b.169.1.1,b.169.1.1 128626,128627 2cszA 76 14.82 1pmlA 86 15.06 g.14.1.1 44632 2p3yA 491 16.75 1p3wA 404 16.87 c.67.1.3 87752 1n7oA 721 16.93 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2gar 212 17.01 2dyuA 334 17.38 1x24A 180 18.53 2i9xA 87 18.81 1gpl 432 19.23 1j1nA 492 20.22 c.94.1.1 83978 1r7aA 504 20.47 b.71.1.1,c.1.8.1 97192,97193 1kdkA 177 21.74 b.29.1.4 72351 1mwmA 320 22.10 c.55.1.1,c.55.1.1 79580,79581 2j5aA 110 22.17 3b3qE 197 22.38 1g8kA 825 23.16 b.52.2.2,c.81.1.1 26920,35328 2h88B 252 23.33 1b97A 244 24.00 c.52.1.2 33252 1b94A 244 24.72 c.52.1.2 33250 2ebeA 106 24.82 2yyoA 171 25.41 1z85A 234 26.51 1lba 146 27.61 2fjlA 150 29.88 b.55.1.1 133611 1kbvA 327 31.10 b.6.1.3,b.6.1.3 68395,68396 1nmeB 92 31.30 1ih7A 903 31.86 c.55.3.5,e.8.1.1 62375,62376 2a90A 240 32.02 1j0hA 588 32.45 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2g3rA 123 32.60 b.34.9.1,b.34.9.1 134570,134571 1at0 145 33.00 1zldA 120 33.37 1or0B 528 33.59 1iazA 179 33.75 b.97.1.1 62131 2btlA 134 33.97 b.148.1.1 129154 1eg5A 384 34.27 c.67.1.3 34429 1i06A 180 34.64 b.60.1.1 27131 1b96A 244 35.30 c.52.1.2 33268 1eonA 245 36.90 c.52.1.2 33238 1vprA 374 37.89 b.60.1.7 120066 1qy1A 174 38.44 b.60.1.1 96568 1ao0A 459 38.94 c.61.1.1,d.153.1.1 34049,41816 1i71A 83 38.96 g.14.1.1 61864 2nujA 163 39.19 d.38.1.1 138608 1gwyA 175 39.48 b.97.1.1 83356 1lf7A 182 40.32 b.60.1.1 73878 1krnA 88 41.42 g.14.1.1 44629 2ps1A 226 41.73 1jkxA 212 41.74 c.65.1.1 66813 2i2lA 142 42.17 1ae9A 179 43.91 d.163.1.1 42153 2ra6A 166 44.27 2h2tB 175 44.91 2yueA 168 45.39 1at0A 145 45.74 b.86.1.1 28374 2dbjA 124 46.01 1r61A 207 46.72 c.8.8.1 97138 1ajqB 557 46.93 1gkfB 557 47.29 1q3iA 214 48.11 d.220.1.1 104524 2opkA 112 49.01 1gk9B 557 49.84 1kd6A 179 50.52 b.97.1.1 68459 1xo7A 166 51.63 b.62.1.1 115694 2qjlA 99 51.71 1fggA 261 53.73 c.68.1.7 34576 1cfb 205 53.82 1b3eA 330 54.01 c.94.1.2 35897 1uasA 362 54.05 b.71.1.1,c.1.8.1 88388,88389 2fiwA 172 56.75 d.108.1.1 133539 1ekgA 127 57.11 d.82.2.1 40021 1g8lA 411 59.61 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2g84A 197 59.81 c.97.1.2 134766 1qqsA 174 60.49 b.60.1.1 27143 1g71A 347 62.04 d.264.1.1 43268 1fnhA 271 62.31 b.1.2.1,b.1.2.1,b.1.2.1 21976,21977,21978 2bzlA 325 62.35 2hq2A 354 63.17 e.62.1.1 136656 1qu0A 191 64.53 b.29.1.4 24225 1bngA 110 64.84 d.1.1.2 36184 1xgsA 295 65.15 a.4.5.25,d.127.1.1 16216,41153 1b2zA 110 65.68 d.1.1.2 36216 1e3aB 560 65.87 1vjvA 415 66.10 d.3.1.9 108632 2ffwA 78 66.31 2q1zB 195 66.50 1yewA 382 67.76 2dkhA 639 68.25 1zndA 174 68.78 b.60.1.1 125380 2geeA 203 69.42 1kmkA 406 71.29 c.67.1.3 68696 1nxzA 246 71.52 b.122.1.2,c.116.1.5 86391,86392 1yoaA 159 72.10 b.45.1.2 123775 1ris 101 72.41 1rz2A 254 75.00 b.100.1.1 105130 1m4jA 142 75.18 d.109.1.2 78602 2io8A 619 75.25 c.30.1.7,d.3.1.15,d.142.1.8 137549,137550,137551 2fiqA 420 75.37 c.1.10.7 133527 1epaA 164 77.67 b.60.1.1 27128 5hpgA 84 78.37 g.14.1.1 44642 1qtqA 553 78.37 b.53.1.2,c.26.1.1 26940,31579 1ly7A 121 78.56 d.82.2.1 74339 1yckA 175 78.82 d.118.1.1 122968 2jg0A 535 79.28 1jqfA 334 80.14 c.94.1.2 67086 1h0pA 182 81.08 b.62.1.1 76450 1v33A 366 82.51 d.264.1.1 100278 1t50A 58 87.11 g.63.1.1 99124 1pyoB 105 87.35 1cfbA 205 87.39 b.1.2.1,b.1.2.1 21991,21992 2j0pA 345 87.57 e.62.1.1 137903 1louA 101 87.82 d.58.14.1 39323