# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.1981 b.34.9.1 84964 1g5vA 88 0.3140 b.34.9.1 60292 2gfaA 119 0.7844 b.34.9.1,b.34.9.1 135089,135090 1x1iA 752 0.8118 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1vqoK 132 0.8173 b.39.1.1 120372 1wgsA 133 0.9843 b.34.13.3 114622 1n7oA 721 1.080 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2eqkA 85 1.602 1jfxA 217 2.367 c.1.8.8 62943 1qtnB 95 2.587 2a90A 240 2.887 1r7aA 504 3.126 b.71.1.1,c.1.8.1 97192,97193 1xniA 118 5.230 b.34.9.1,b.34.9.1 115582,115583 1zc1A 208 5.270 2hqxA 246 5.606 b.34.9.1 136675 1zoyB 252 5.614 1rkiA 102 5.859 d.308.1.2 118776 2bjrA 368 6.118 b.169.1.1,b.169.1.1 128628,128629 1ecxA 384 6.749 c.67.1.3 34431 1nmeB 92 7.769 1sk4A 163 8.365 d.118.1.1 105664 1pz7A 204 8.402 b.29.1.4 95405 2bjqA 345 8.872 b.169.1.1,b.169.1.1 128626,128627 2qqrA 118 9.138 2gar 212 9.336 2cszA 76 9.845 1ssfA 156 10.00 b.34.9.1,b.34.9.1 105982,105983 1x89A 178 10.65 b.60.1.1 121799 1pyoB 105 11.78 1pmlA 86 11.90 g.14.1.1 44632 1v6zA 228 13.02 b.122.1.2,c.116.1.5 113551,113552 1t50A 58 13.02 g.63.1.1 99124 1x24A 180 13.80 1djqA 729 14.87 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1gpl 432 15.32 1jkxA 212 15.68 c.65.1.1 66813 2j5aA 110 15.69 1f5fA 205 15.98 b.29.1.4 24222 1vhyA 257 17.02 b.122.1.2,c.116.1.5 100714,100715 1krnA 88 18.25 g.14.1.1 44629 1j0mA 752 18.57 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 1k12A 158 20.03 b.18.1.15 71978 1c4rA 182 20.11 b.29.1.4 24229 2egvA 229 20.13 1i71A 83 20.85 g.14.1.1 61864 2ffwA 78 21.62 1lba 146 21.81 2ofzA 138 22.08 1lxkA 721 22.78 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 1epaA 164 23.54 b.60.1.1 27128 2h88B 252 23.90 1vlqA 337 24.57 c.69.1.25 108848 1qy1A 174 27.64 b.60.1.1 96568 1i06A 180 27.81 b.60.1.1 27131 1bkcI 256 27.89 d.92.1.10 40334 2hs8A 402 28.03 1fqvA 336 28.23 a.158.1.1,c.10.1.3 19254,30856 2yueA 168 28.31 3bs4A 260 28.42 1h30A 422 28.74 b.29.1.4,b.29.1.4 76604,76605 2f5kA 102 28.93 b.34.13.3 132995 2dyuA 334 28.95 2g84A 197 29.10 c.97.1.2 134766 1eg5A 384 31.43 c.67.1.3 34429 2gouA 365 31.82 1kbvA 327 32.33 b.6.1.3,b.6.1.3 68395,68396 1uu1A 335 33.29 c.67.1.1 99993 1p3wA 404 33.70 c.67.1.3 87752 1nnvA 110 34.08 d.17.7.1 92012 1zldA 120 36.00 2gduA 504 36.32 b.71.1.1,c.1.8.1 135032,135033 2i9xA 87 37.86 1mwmA 320 38.12 c.55.1.1,c.55.1.1 79580,79581 1fggA 261 38.65 c.68.1.7 34576 1j1nA 492 38.81 c.94.1.1 83978 1egiA 147 38.99 d.169.1.1 42331 2aynA 404 39.87 d.3.1.9 127563 2nujA 163 39.93 d.38.1.1 138608 1cfb 205 41.27 2btlA 134 41.75 b.148.1.1 129154 1uasA 362 41.86 b.71.1.1,c.1.8.1 88388,88389 1oycA 400 42.07 c.1.4.1 28603 1wmvA 54 42.83 1go7P 462 42.94 b.80.7.1,d.92.1.6 76245,76246 2g3rA 123 43.14 b.34.9.1,b.34.9.1 134570,134571 2h2tB 175 44.05 2i2lA 142 44.56 1fd9A 213 44.94 d.26.1.1 59771 1eguA 731 45.91 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1kdkA 177 46.03 b.29.1.4 72351 2ps1A 226 46.73 1g8kA 825 46.86 b.52.2.2,c.81.1.1 26920,35328 1g8lA 411 46.88 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2h8zA 359 47.49 1rz2A 254 48.35 b.100.1.1 105130 2abbA 364 50.76 c.1.4.1 126517 1lf7A 182 50.77 b.60.1.1 73878 1b97A 244 51.49 c.52.1.2 33252 2dkoB 103 51.98 1iazA 179 52.63 b.97.1.1 62131 2hsaA 402 53.27 2je0A 149 54.03 1v8hA 107 54.38 b.1.18.19 119870 1uokA 558 54.98 b.71.1.1,c.1.8.1 27801,28788 1b94A 244 56.80 c.52.1.2 33250 1gwyA 175 57.03 b.97.1.1 83356 1rwhA 757 57.66 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1bngA 110 58.17 d.1.1.2 36184 1or0B 528 59.76 1cxlA 686 60.32 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 2ebeA 106 60.72 1x0oA 119 60.80 2r6uA 148 62.01 2yyoA 171 62.35 1at0 145 62.47 2cwzA 141 63.52 d.38.1.7 130961 1zndA 174 64.32 b.60.1.1 125380 1oroA 213 65.06 c.61.1.1 34093 1at0A 145 67.47 b.86.1.1 28374 2fjlA 150 67.67 b.55.1.1 133611 2geeA 203 67.95 2eryA 172 68.30 c.37.1.8 132306 1k7iA 479 69.72 b.80.7.1,d.92.1.6 77281,77282 2psoA 237 69.98 1b2zA 110 70.01 d.1.1.2 36216 1sc3B 88 70.18 2bvyA 475 70.20 b.1.18.2,c.1.8.3 129301,129302 5hpgA 84 70.50 g.14.1.1 44642 1kd6A 179 70.60 b.97.1.1 68459 1bag 425 70.82 2ra6A 166 70.94 1ew3A 159 71.05 b.60.1.1 27114 1z41A 338 71.06 c.1.4.1 124421 2opkA 112 71.75 1qqsA 174 71.85 b.60.1.1 27143 1eonA 245 72.70 c.52.1.2 33238 2cztA 167 74.40 1ao0A 459 75.05 c.61.1.1,d.153.1.1 34049,41816 1gm6A 175 75.61 b.60.1.1 70272 2qjlA 99 76.01 1zjaA 557 77.23 1f20A 435 79.29 b.43.4.1,c.25.1.4 64932,64933 1sr9A 644 79.63 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1cfbA 205 80.01 b.1.2.1,b.1.2.1 21991,21992 7taa 478 80.61 1ris 101 80.76 2ze0A 555 81.74 1b96A 244 81.77 c.52.1.2 33268 1xo7A 166 83.58 b.62.1.1 115694 2pigA 334 83.86 1v33A 366 86.00 d.264.1.1 100278 2a1hA 365 88.82 e.17.1.1 125997 2iwvA 281 89.32 1kv7A 488 89.34 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875