# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.4540 b.34.9.1 84964 1g5vA 88 0.7233 b.34.9.1 60292 1vqoK 132 0.8109 b.39.1.1 120372 1x1iA 752 0.8867 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1n7oA 721 1.109 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1wgsA 133 1.271 b.34.13.3 114622 2gfaA 119 1.503 b.34.9.1,b.34.9.1 135089,135090 2a90A 240 2.383 1qtnB 95 3.192 2eqkA 85 3.254 1jfxA 217 3.271 c.1.8.8 62943 1r7aA 504 4.246 b.71.1.1,c.1.8.1 97192,97193 1rkiA 102 4.370 d.308.1.2 118776 1zc1A 208 7.254 2hqxA 246 7.348 b.34.9.1 136675 1pz7A 204 7.922 b.29.1.4 95405 1ecxA 384 8.486 c.67.1.3 34431 1zoyB 252 8.885 1xniA 118 9.053 b.34.9.1,b.34.9.1 115582,115583 2bjrA 368 9.223 b.169.1.1,b.169.1.1 128628,128629 1ssfA 156 10.16 b.34.9.1,b.34.9.1 105982,105983 1sk4A 163 10.22 d.118.1.1 105664 1f5fA 205 11.10 b.29.1.4 24222 1nmeB 92 11.20 2cszA 76 12.21 1t50A 58 12.94 g.63.1.1 99124 1djqA 729 13.96 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 2bjqA 345 14.64 b.169.1.1,b.169.1.1 128626,128627 1pyoB 105 16.60 2gar 212 16.97 3bs4A 260 17.50 1v6zA 228 19.00 b.122.1.2,c.116.1.5 113551,113552 2j5aA 110 19.20 1c4rA 182 19.60 b.29.1.4 24229 1h30A 422 19.69 b.29.1.4,b.29.1.4 76604,76605 1j0mA 752 20.18 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 2ofzA 138 20.36 1fqvA 336 21.23 a.158.1.1,c.10.1.3 19254,30856 1pmlA 86 21.25 g.14.1.1 44632 2ffwA 78 22.12 1k12A 158 22.63 b.18.1.15 71978 1lxkA 721 22.82 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 2qqrA 118 23.17 1vlqA 337 23.54 c.69.1.25 108848 1vhyA 257 24.02 b.122.1.2,c.116.1.5 100714,100715 2gouA 365 24.10 1x24A 180 24.16 1uu1A 335 24.87 c.67.1.1 99993 2hs8A 402 25.91 1uasA 362 26.71 b.71.1.1,c.1.8.1 88388,88389 1fggA 261 27.28 c.68.1.7 34576 1lba 146 27.54 1mwmA 320 27.63 c.55.1.1,c.55.1.1 79580,79581 1kbvA 327 28.03 b.6.1.3,b.6.1.3 68395,68396 2h88B 252 29.44 1x89A 178 29.47 b.60.1.1 121799 1cfb 205 29.98 1g8lA 411 30.21 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1oycA 400 30.25 c.1.4.1 28603 1krnA 88 30.70 g.14.1.1 44629 1jkxA 212 32.02 c.65.1.1 66813 1bkcI 256 33.24 d.92.1.10 40334 2abbA 364 33.27 c.1.4.1 126517 1zldA 120 33.28 1fd9A 213 33.30 d.26.1.1 59771 1i71A 83 33.54 g.14.1.1 61864 1g8kA 825 33.63 b.52.2.2,c.81.1.1 26920,35328 1kdkA 177 35.03 b.29.1.4 72351 1iazA 179 36.05 b.97.1.1 62131 1eguA 731 38.13 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1gpl 432 38.95 2h8zA 359 39.32 1go7P 462 39.85 b.80.7.1,d.92.1.6 76245,76246 1j1nA 492 40.21 c.94.1.1 83978 2g84A 197 40.81 c.97.1.2 134766 1eg5A 384 40.85 c.67.1.3 34429 1gwyA 175 41.48 b.97.1.1 83356 2aynA 404 41.81 d.3.1.9 127563 1p3wA 404 42.52 c.67.1.3 87752 1v8hA 107 44.23 b.1.18.19 119870 2egvA 229 44.96 1z41A 338 45.42 c.1.4.1 124421 2f5kA 102 45.62 b.34.13.3 132995 2i9xA 87 46.54 1rwhA 757 46.59 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 2yueA 168 46.65 2hsaA 402 48.28 1zkcA 197 48.37 b.62.1.1 125182 2i2lA 142 48.69 2h2tB 175 48.81 2dyuA 334 49.41 2gduA 504 49.67 b.71.1.1,c.1.8.1 135032,135033 2geeA 203 51.60 2btlA 134 52.02 b.148.1.1 129154 1wmvA 54 52.14 1xo7A 166 53.25 b.62.1.1 115694 1cfbA 205 54.05 b.1.2.1,b.1.2.1 21991,21992 2dkoB 103 56.24 1k7iA 479 60.12 b.80.7.1,d.92.1.6 77281,77282 2io8A 619 62.18 c.30.1.7,d.3.1.15,d.142.1.8 137549,137550,137551 1kv7A 488 62.81 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 3b3qE 197 65.56 1rz2A 254 65.59 b.100.1.1 105130 2je0A 149 65.86 2ps1A 226 66.52 1ao0A 459 69.11 c.61.1.1,d.153.1.1 34049,41816 2fiwA 172 69.44 d.108.1.1 133539 2p3yA 491 72.19 2iwvA 281 73.67 1b97A 244 73.73 c.52.1.2 33252 1ris 101 74.56 1bag 425 75.42 1cxlA 686 75.58 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 1nnvA 110 75.97 d.17.7.1 92012 1i06A 180 76.74 b.60.1.1 27131 1egiA 147 76.87 d.169.1.1 42331 2ebeA 106 77.82 1at0 145 79.31 1b94A 244 80.04 c.52.1.2 33250 2fjlA 150 80.99 b.55.1.1 133611 1oroA 213 83.28 c.61.1.1 34093 1qy1A 174 84.35 b.60.1.1 96568 1jdpA 441 85.42 c.93.1.1 62906 1louA 101 85.80 d.58.14.1 39323 1epaA 164 86.24 b.60.1.1 27128 1sc3B 88 87.11 1at0A 145 87.30 b.86.1.1 28374 2dbjA 124 88.53 2jd4A 383 89.48 2o5aA 125 89.85