# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.1952 b.34.9.1 84964 1g5vA 88 0.2918 b.34.9.1 60292 1vqoK 132 0.5100 b.39.1.1 120372 1wgsA 133 0.6925 b.34.13.3 114622 2gfaA 119 0.8406 b.34.9.1,b.34.9.1 135089,135090 1x1iA 752 0.9426 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1n7oA 721 1.433 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2eqkA 85 2.410 1jfxA 217 2.859 c.1.8.8 62943 1rkiA 102 3.346 d.308.1.2 118776 2a90A 240 3.990 2hqxA 246 4.145 b.34.9.1 136675 1zoyB 252 4.440 1zc1A 208 4.839 1pz7A 204 5.157 b.29.1.4 95405 1sk4A 163 5.895 d.118.1.1 105664 1xniA 118 6.168 b.34.9.1,b.34.9.1 115582,115583 2cszA 76 7.004 1ecxA 384 7.039 c.67.1.3 34431 1qtnB 95 7.319 1r7aA 504 7.338 b.71.1.1,c.1.8.1 97192,97193 2bjrA 368 7.413 b.169.1.1,b.169.1.1 128628,128629 1f5fA 205 8.237 b.29.1.4 24222 1ssfA 156 8.644 b.34.9.1,b.34.9.1 105982,105983 1v6zA 228 10.17 b.122.1.2,c.116.1.5 113551,113552 1pmlA 86 10.57 g.14.1.1 44632 1vhyA 257 10.95 b.122.1.2,c.116.1.5 100714,100715 2bjqA 345 11.42 b.169.1.1,b.169.1.1 128626,128627 1h30A 422 11.54 b.29.1.4,b.29.1.4 76604,76605 1x89A 178 12.59 b.60.1.1 121799 1t50A 58 12.96 g.63.1.1 99124 2qqrA 118 13.71 1c4rA 182 13.81 b.29.1.4 24229 2ofzA 138 14.27 1k12A 158 15.77 b.18.1.15 71978 1x24A 180 16.51 2ffwA 78 16.85 1djqA 729 20.84 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1gpl 432 20.93 1i71A 83 21.33 g.14.1.1 61864 1nmeB 92 21.45 2gar 212 21.65 1lba 146 22.10 1g8kA 825 22.52 b.52.2.2,c.81.1.1 26920,35328 1mwmA 320 22.53 c.55.1.1,c.55.1.1 79580,79581 1krnA 88 22.82 g.14.1.1 44629 2j5aA 110 23.70 2g84A 197 24.13 c.97.1.2 134766 1kbvA 327 24.50 b.6.1.3,b.6.1.3 68395,68396 1j0mA 752 24.54 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 1fggA 261 25.75 c.68.1.7 34576 1zldA 120 26.06 2h88B 252 27.39 2egvA 229 28.02 2h2tB 175 29.29 2btlA 134 29.69 b.148.1.1 129154 1p3wA 404 29.86 c.67.1.3 87752 1kdkA 177 30.29 b.29.1.4 72351 1uu1A 335 31.83 c.67.1.1 99993 1uasA 362 33.05 b.71.1.1,c.1.8.1 88388,88389 1bkcI 256 33.12 d.92.1.10 40334 1eg5A 384 33.29 c.67.1.3 34429 1jkxA 212 33.75 c.65.1.1 66813 1iazA 179 34.07 b.97.1.1 62131 2yueA 168 35.93 1pyoB 105 36.66 2i2lA 142 36.77 1lxkA 721 37.09 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 2f5kA 102 37.12 b.34.13.3 132995 1vlqA 337 37.61 c.69.1.25 108848 1j1nA 492 37.98 c.94.1.1 83978 1fqvA 336 39.32 a.158.1.1,c.10.1.3 19254,30856 1ao0A 459 39.76 c.61.1.1,d.153.1.1 34049,41816 2hs8A 402 39.97 2aynA 404 40.83 d.3.1.9 127563 1epaA 164 40.99 b.60.1.1 27128 2dyuA 334 41.47 1qy1A 174 41.80 b.60.1.1 96568 1wmvA 54 42.20 1cfb 205 43.67 1fd9A 213 43.79 d.26.1.1 59771 2i9xA 87 44.77 2ps1A 226 44.95 1gwyA 175 45.00 b.97.1.1 83356 1oycA 400 45.90 c.1.4.1 28603 2gouA 365 46.11 1rz2A 254 47.06 b.100.1.1 105130 2cwzA 141 48.88 d.38.1.7 130961 2g3rA 123 48.95 b.34.9.1,b.34.9.1 134570,134571 1i06A 180 49.15 b.60.1.1 27131 1egiA 147 51.42 d.169.1.1 42331 1v8hA 107 52.39 b.1.18.19 119870 3bs4A 260 52.42 1kv7A 488 54.72 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 2h8zA 359 55.55 1g8lA 411 59.27 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 3b3qE 197 59.43 1zkcA 197 60.81 b.62.1.1 125182 1rwhA 757 61.30 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1eguA 731 61.41 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 5hpgA 84 61.95 g.14.1.1 44642 1go7P 462 62.22 b.80.7.1,d.92.1.6 76245,76246 2pigA 334 62.36 1or0B 528 63.17 2geeA 203 64.32 2abbA 364 64.54 c.1.4.1 126517 2qjlA 99 65.23 1oroA 213 66.33 c.61.1.1 34093 1lf7A 182 66.40 b.60.1.1 73878 1z85A 234 67.91 2ebeA 106 68.37 2fiwA 172 69.30 d.108.1.1 133539 2eryA 172 70.09 c.37.1.8 132306 1b94A 244 70.61 c.52.1.2 33250 1b97A 244 70.74 c.52.1.2 33252 2exuA 200 70.78 1at0 145 73.18 2cztA 167 73.27 1yemA 179 73.29 d.63.1.2 116646 2hm3A 31 74.72 2fjlA 150 74.82 b.55.1.1 133611 2p3yA 491 76.74 1ivzA 132 76.76 d.58.41.1 76863 2jd4A 383 78.43 1bngA 110 78.76 d.1.1.2 36184 1pn0A 665 79.34 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1at0A 145 79.59 b.86.1.1 28374 2yyoA 171 79.61 2hsaA 402 79.63 1cfbA 205 80.29 b.1.2.1,b.1.2.1 21991,21992 1xo7A 166 81.85 b.62.1.1 115694 2dbjA 124 83.77 2r6uA 148 84.19 1nnvA 110 85.13 d.17.7.1 92012 1zndA 174 85.62 b.60.1.1 125380 2nujA 163 85.64 d.38.1.1 138608 1qf6A 642 86.15 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1jdpA 441 86.39 c.93.1.1 62906 1gm6A 175 86.76 b.60.1.1 70272 1kt6A 183 87.83 b.60.1.1 84466 1b2zA 110 88.34 d.1.1.2 36216 2io8A 619 89.40 c.30.1.7,d.3.1.15,d.142.1.8 137549,137550,137551