# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.3749 b.34.9.1 84964 1g5vA 88 0.7123 b.34.9.1 60292 2gfaA 119 0.9559 b.34.9.1,b.34.9.1 135089,135090 1vqoK 132 0.9715 b.39.1.1 120372 1wgsA 133 1.207 b.34.13.3 114622 1jfxA 217 1.330 c.1.8.8 62943 1n7oA 721 2.019 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1x1iA 752 2.589 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2eqkA 85 2.703 2a90A 240 2.851 1x89A 178 4.286 b.60.1.1 121799 1qtnB 95 4.685 2bjrA 368 6.069 b.169.1.1,b.169.1.1 128628,128629 2ofzA 138 7.503 1ssfA 156 8.003 b.34.9.1,b.34.9.1 105982,105983 1xniA 118 8.181 b.34.9.1,b.34.9.1 115582,115583 1pz7A 204 9.123 b.29.1.4 95405 2bjqA 345 9.279 b.169.1.1,b.169.1.1 128626,128627 1zc1A 208 9.442 1sk4A 163 9.844 d.118.1.1 105664 1ecxA 384 10.23 c.67.1.3 34431 2hqxA 246 10.77 b.34.9.1 136675 1rkiA 102 11.40 d.308.1.2 118776 1t50A 58 11.80 g.63.1.1 99124 2btlA 134 12.73 b.148.1.1 129154 1f5fA 205 12.78 b.29.1.4 24222 1nmeB 92 13.72 1uasA 362 14.04 b.71.1.1,c.1.8.1 88388,88389 2ffwA 78 15.14 1r7aA 504 15.57 b.71.1.1,c.1.8.1 97192,97193 1h30A 422 16.02 b.29.1.4,b.29.1.4 76604,76605 2qqrA 118 16.10 1zoyB 252 16.34 1pmlA 86 17.50 g.14.1.1 44632 1i06A 180 17.53 b.60.1.1 27131 1qy1A 174 19.12 b.60.1.1 96568 2cszA 76 19.30 2hs8A 402 20.23 1kdkA 177 20.59 b.29.1.4 72351 1krnA 88 20.90 g.14.1.1 44629 1v6zA 228 20.96 b.122.1.2,c.116.1.5 113551,113552 2j5aA 110 22.43 2i9xA 87 22.67 1j1nA 492 22.70 c.94.1.1 83978 1oycA 400 24.79 c.1.4.1 28603 2h8zA 359 24.91 1vhyA 257 25.43 b.122.1.2,c.116.1.5 100714,100715 1gpl 432 25.53 1xo7A 166 26.12 b.62.1.1 115694 1c4rA 182 26.78 b.29.1.4 24229 2gar 212 26.94 1lf7A 182 27.78 b.60.1.1 73878 1fggA 261 28.07 c.68.1.7 34576 1qqsA 174 29.19 b.60.1.1 27143 1pyoB 105 29.31 1kbvA 327 29.81 b.6.1.3,b.6.1.3 68395,68396 2f5kA 102 30.08 b.34.13.3 132995 1i71A 83 30.76 g.14.1.1 61864 1zkcA 197 30.83 b.62.1.1 125182 1k12A 158 31.75 b.18.1.15 71978 1mwmA 320 32.99 c.55.1.1,c.55.1.1 79580,79581 1sr9A 644 34.07 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1lba 146 35.43 1jdpA 441 36.73 c.93.1.1 62906 1bkcI 256 37.04 d.92.1.10 40334 1wmvA 54 37.56 1djqA 729 38.06 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 2gouA 365 38.17 2h88B 252 38.60 2psoA 237 39.92 1zldA 120 40.04 1lxkA 721 40.05 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 1z41A 338 40.16 c.1.4.1 124421 1epaA 164 40.46 b.60.1.1 27128 2hsaA 402 40.64 3bs4A 260 41.98 2jd4A 383 42.58 1fqvA 336 43.60 a.158.1.1,c.10.1.3 19254,30856 2av9A 147 44.57 d.38.1.1 127365 1zndA 174 45.34 b.60.1.1 125380 2iwvA 281 46.28 1b2zA 110 46.44 d.1.1.2 36216 1j0mA 752 46.70 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 2abbA 364 46.80 c.1.4.1 126517 2yueA 168 48.88 1g71A 347 49.71 d.264.1.1 43268 2nujA 163 49.81 d.38.1.1 138608 2ps1A 226 49.84 1bngA 110 51.14 d.1.1.2 36184 2ebeA 106 52.12 1p3wA 404 52.27 c.67.1.3 87752 1gm6A 175 52.64 b.60.1.1 70272 2oh5A 248 52.83 2yyoA 171 53.25 2r6uA 148 53.93 2je0A 149 54.41 1mup 166 56.58 2ra6A 166 56.60 1jkxA 212 57.15 c.65.1.1 66813 1eg5A 384 57.29 c.67.1.3 34429 1v33A 366 57.45 d.264.1.1 100278 2dbjA 124 57.75 1egiA 147 58.16 d.169.1.1 42331 2geeA 203 58.46 1x24A 180 58.88 2gecA 139 59.94 b.148.1.1 135059 2cwzA 141 60.34 d.38.1.7 130961 2dyuA 334 60.74 1cfb 205 61.12 1g8lA 411 61.48 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1v8hA 107 62.54 b.1.18.19 119870 2acoA 173 63.25 1cxlA 686 63.27 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 1i78A 297 63.58 f.4.4.1 66046 3b3qE 197 64.13 1go7P 462 66.79 b.80.7.1,d.92.1.6 76245,76246 2h2tB 175 67.89 1fd9A 213 69.74 d.26.1.1 59771 2bxxA 134 70.00 b.148.1.1 129446 2io8A 619 70.02 c.30.1.7,d.3.1.15,d.142.1.8 137549,137550,137551 2egvA 229 70.56 1eguA 731 71.84 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 2dkoB 103 72.71 1g8kA 825 72.89 b.52.2.2,c.81.1.1 26920,35328 2coiA 386 76.55 1kt6A 183 76.81 b.60.1.1 84466 1b97A 244 77.24 c.52.1.2 33252 1b94A 244 77.97 c.52.1.2 33250 1iazA 179 77.99 b.97.1.1 62131 1vlqA 337 78.08 c.69.1.25 108848 2opkA 112 78.49 2f1cX 286 80.15 1jv4A 162 80.58 b.60.1.1 67343 1h0pA 182 81.48 b.62.1.1 76450 2fjlA 150 82.22 b.55.1.1 133611 2aacA 177 82.51 b.82.4.1 28150 1uu1A 335 82.79 c.67.1.1 99993 2i2lA 142 83.31 1cfbA 205 83.38 b.1.2.1,b.1.2.1 21991,21992 2a1hA 365 84.11 e.17.1.1 125997 1edhA 226 84.16 b.1.6.1,b.1.6.1 22198,22199 1gpc 218 88.02 1bebA 162 88.47 b.60.1.1 27115