# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 5.831 b.34.9.1 84964 1uasA 362 5.915 b.71.1.1,c.1.8.1 88388,88389 1wgsA 133 6.061 b.34.13.3 114622 2a2nA 176 7.494 b.62.1.1 126041 1vqoK 132 7.672 b.39.1.1 120372 1j31A 262 7.768 d.160.1.2 90808 2gfaA 119 7.937 b.34.9.1,b.34.9.1 135089,135090 4dpvZ 584 8.113 b.121.5.2 23377 1zkcA 197 8.890 b.62.1.1 125182 1ih7A 903 12.26 c.55.3.5,e.8.1.1 62375,62376 1g5vA 88 12.49 b.34.9.1 60292 2dnjA 260 12.62 d.151.1.1 41790 2j6iA 364 13.14 1qtnB 95 14.13 2egvA 229 14.62 2eqkA 85 15.17 1zu0A 529 15.74 1mwmA 320 17.89 c.55.1.1,c.55.1.1 79580,79581 1tgoA 773 18.47 c.55.3.5,e.8.1.1 33721,43010 3b3qE 197 19.70 1i06A 180 19.82 b.60.1.1 27131 2q4aA 330 22.52 b.82.2.8 139839 1ffyA 917 26.64 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1v9tA 166 28.95 b.62.1.1 108451 1zoyB 252 29.01 2hqxA 246 30.16 b.34.9.1 136675 1kqfB 294 32.64 d.58.1.5,f.23.22.1 75900,75901 1ju2A 536 34.62 c.3.1.2,d.16.1.1 77169,77170 2dyuA 334 35.69 2a1hA 365 37.00 e.17.1.1 125997 1jv2B 692 37.38 b.1.15.1,c.62.1.1,d.200.1.1,g.3.11.6,g.3.11.6 67338,67339,67340,67341,67342 2vdaA 828 37.57 2v74B 346 38.05 1at0 145 38.80 2a90A 240 39.18 1qg0A 308 40.02 b.43.4.2,c.25.1.1 25639,31529 2d3aA 356 40.61 1fnhA 271 40.66 b.1.2.1,b.1.2.1,b.1.2.1 21976,21977,21978 1cp3A 277 43.68 c.17.1.1 30992 1rkiA 102 43.91 d.308.1.2 118776 3biaX 116 44.25 2cas 548 45.08 2fu0A 160 45.35 b.62.1.1 134095 1qx4A 274 45.59 b.43.4.2,c.25.1.1 104624,104625 1ihgA 370 45.87 a.118.8.1,b.62.1.1 62380,62381 2cztA 167 46.37 1oe1A 336 48.24 b.6.1.3,b.6.1.3 86891,86892 1p9aG 290 48.82 c.10.2.7 87990 2bylA 439 49.06 c.67.1.4 129490 1sk4A 163 49.75 d.118.1.1 105664 1uwwA 191 49.76 b.18.1.23 108079 2z6wA 165 50.10 1xniA 118 50.92 b.34.9.1,b.34.9.1 115582,115583 2bjrA 368 51.34 b.169.1.1,b.169.1.1 128628,128629 1rwhA 757 54.21 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 2vq3A 215 54.73 1zc1A 208 55.25 1iejA 332 55.51 c.94.1.2 62328 1xhdA 173 56.38 b.81.1.5 115295 1lba 146 57.10 1ajqB 557 58.30 1pg4A 652 59.78 e.23.1.1 88067 3b2mA 295 60.91 1ssfA 156 61.60 b.34.9.1,b.34.9.1 105982,105983 1bag 425 61.84 1a3qA 285 64.38 b.1.18.1,b.2.5.3 21932,22447 1bli 483 65.19 2cxaA 256 65.32 d.108.1.6 130993 1lf7A 182 66.23 b.60.1.1 73878 2qedA 258 66.39 1oycA 400 67.36 c.1.4.1 28603 2bjqA 345 67.97 b.169.1.1,b.169.1.1 128626,128627 2rhsB 800 68.81 1qycA 308 68.86 c.2.1.2 96581 1sat 471 70.36 2ofzA 138 71.43 1sc6A 404 72.86 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1r1hA 696 72.99 d.92.1.4 104756 1yu0A 381 73.99 b.163.1.1,d.169.1.8 124025,124026 1f5fA 205 74.52 b.29.1.4 24222 2hjeA 221 76.46 1gph1 465 76.59 1fggA 261 76.95 c.68.1.7 34576 1at0A 145 77.21 b.86.1.1 28374 2jd4A 383 77.50 1x89A 178 77.87 b.60.1.1 121799 2imjA 166 77.99 1wdaA 670 78.10 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 1g9mG 321 78.70 d.172.1.1 42492 1fwxA 595 78.76 b.6.1.4,b.69.3.1 60069,60070 1x3lA 440 79.33 2pe3A 354 80.49 2bitX 165 80.69 b.62.1.1 128590 1y44A 320 83.59 d.157.1.7 122608 1cr5A 189 87.67 b.52.2.3,d.31.1.1 26931,38465 1dykA 394 87.94 b.29.1.4,b.29.1.4 24223,24224 2oxgA 108 88.09 1ryoA 327 88.53 c.94.1.2 98108 1nmeB 92 89.64 2abbA 364 89.96 c.1.4.1 126517