# List of top-scoring protein chains for T0429.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e96A 192 3.309 c.37.1.8 32007 1i4tD 192 3.311 c.37.1.8 61731 2nnwA 376 3.346 2diqA 110 3.909 b.34.9.1 131531 1q7eA 428 4.885 c.123.1.1 96035 2bmjA 178 4.973 c.37.1.8 128797 2iwrA 178 5.503 1pt7A 437 5.692 c.123.1.1 95093 3bboF 259 5.730 2jp2A 126 6.247 1bpvA 112 8.403 b.1.2.1 22071 1i4dD 192 14.31 c.37.1.8 61684 2o4xB 91 14.66 1ryhA 203 15.01 c.37.1.8 98102 2c2hA 192 15.08 c.37.1.8 129668 1hh4A 192 15.70 c.37.1.8 61037 2e6nA 104 15.81 2o4xA 217 17.24 3byvA 377 17.27 1he1C 176 17.82 c.37.1.8 32003 2nz8A 177 17.98 c.37.1.8 138837 2fjuA 178 18.11 c.37.1.8 133622 1g4uR 184 18.86 c.37.1.8 32005 1mh1A 186 20.50 c.37.1.8 32002 1gmiA 136 20.63 b.7.1.1 65309 2p2lA 188 20.85 c.37.1.8 139465 1wl3A 299 21.32 2ic5A 180 21.67 1vg3A 299 22.36 a.128.1.1 108601 2qmeA 179 22.39 1v4kA 299 22.46 a.128.1.1 100302 2pthA 193 22.83 c.56.3.1 33793 2hqxA 246 23.06 b.34.9.1 136675 1wl0A 299 23.31 1vg2A 299 23.32 a.128.1.1 108600 1wl2A 299 23.32 1v4jA 299 23.36 a.128.1.1 100300 1wl1A 299 23.78 1vg7A 299 23.89 a.128.1.1 108605 1v4eA 299 24.30 a.128.1.1 100296 1v4iA 299 24.45 a.128.1.1 100299 2azlA 299 24.48 1vg4A 299 24.48 a.128.1.1 108602 1vg6A 299 24.67 a.128.1.1 108604 1wkzA 299 24.81 2jrmA 65 25.59 2hveA 152 25.81 2c2zB 106 26.37 1v4hA 299 26.38 a.128.1.1 100298 2oiwA 136 27.23 2gtlM 217 31.18 b.61.7.1,g.12.1.1,h.1.32.1 135667,135668,135669 1ds6A 192 31.80 c.37.1.8 32006 2nw5A 360 33.32 1qtnB 95 41.60 1ri5A 298 43.99 c.66.1.34 97502 1of5A 221 49.22 d.17.4.2 86933 1i51B 105 50.16 2hvdA 152 53.54 d.58.6.1 136801 1zyqA 698 54.80 c.55.3.5,e.8.1.1 125846,125847 1x9mA 698 54.99 c.55.3.5,e.8.1.1 114999,115000 1ybyA 215 56.92 1t5jA 313 57.68 a.209.1.1 99125 2yuoA 78 58.03 2ajqA 704 58.15 2b67A 204 59.15 d.90.1.1 127970 1z1zA 131 59.55 d.323.1.1 124366 2imlA 199 60.65 1ucnA 152 61.54 d.58.6.1 99183 1ijlA 123 62.92 a.133.1.2 66163 1ehsA 48 62.97 g.2.1.1 43998 1rdzA 337 66.82 e.7.1.1 42882 2cwdA 161 68.31 1fsaA 337 72.13 e.7.1.1 42903 1kz8A 337 72.31 e.7.1.1 77633 5fbpA 335 73.20 e.7.1.1 42873 1yyzA 337 73.20 1levA 337 74.63 e.7.1.1 77911 1frpA 335 74.64 e.7.1.1 42875 1nuyA 337 74.90 e.7.1.1 86213 1fj9A 337 75.80 e.7.1.1 42907 2ql9B 97 76.40 1z41A 338 77.22 c.1.4.1 124421 1f9eB 89 77.95 1qduB 88 78.39 2cjuH 121 82.98 1usyE 208 83.09 c.94.1.1 113426 2dhkA 119 86.89 1usyH 208 87.19 c.94.1.1 113429