# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2f86B 143 3.125 2q8oA 136 5.830 2r7gA 347 5.848 2dkoB 103 6.172 2e2dC 180 6.358 b.40.3.1 131980 1txkA 498 7.548 b.1.18.2,b.30.5.9 107425,107426 1kjwA 295 9.571 b.34.2.1,c.37.1.1 68643,68644 1j1nA 492 10.69 c.94.1.1 83978 2e63A 170 10.86 2hqxA 246 11.39 b.34.9.1 136675 1pyoB 105 11.58 1cfbA 205 12.11 b.1.2.1,b.1.2.1 21991,21992 3cswA 285 12.60 1iyeA 309 12.61 e.17.1.1 83786 1wrvA 308 13.09 1sc3B 88 13.45 1iqqA 200 14.60 d.124.1.1 66274 2cdpA 160 15.07 2eiyA 308 15.57 1d2eA 397 16.25 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1rkiA 102 16.28 d.308.1.2 118776 1iznB 277 16.54 e.43.1.2 83848 3b6nA 187 16.67 1lufA 343 19.69 d.144.1.7 78223 2ov6A 101 20.03 2a1hA 365 20.09 e.17.1.1 125997 2qdeA 397 21.37 1br9 194 22.09 2o5fA 171 22.27 2ftsA 419 23.03 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1qtnB 95 24.11 2iwvA 281 24.37 2yueA 168 25.67 2h41A 95 25.92 2f1lA 187 26.34 b.41.1.4,b.43.3.4 132780,132781 2d9rA 104 26.72 b.129.2.1 131350 8abp 306 28.58 1g2qA 187 28.61 c.61.1.1 65117 2b0vA 153 28.65 d.113.1.1 127650 1mucA 373 29.76 c.1.11.2,d.54.1.1 29236,38880 2qqrA 118 29.88 1p0kA 349 29.95 c.1.4.1 87648 2j01E 206 30.02 1rlwA 126 30.13 b.7.1.1 23177 1d4aA 273 32.22 c.23.5.3 31219 1k2eA 156 32.36 d.113.1.1 72010 2nliA 368 32.52 2afhE 289 33.86 c.37.1.10 126683 2pmzA 880 34.92 1wueA 386 35.06 c.1.11.2,d.54.1.1 114892,114893 2j2jA 197 36.33 2bkdN 134 38.02 1y9lA 115 40.23 2a4dA 160 40.68 d.20.1.1 126152 2am1A 454 41.01 2f1cX 286 41.47 1iarB 207 42.58 b.1.2.1,b.1.2.1 22037,22038 1z4vA 532 44.23 2b3hA 329 45.03 1ten 90 45.26 3d48R 211 46.58 3buuA 229 48.15 2gfaA 119 49.47 b.34.9.1,b.34.9.1 135089,135090 2q8nA 460 50.02 2fytA 340 50.18 c.66.1.6 134391 1ul7A 102 50.25 d.129.6.1 99540 1cq3A 233 50.64 b.27.1.1 23923 2g7iA 125 51.06 1uf5A 303 51.10 d.160.1.2 107808 1vc3B 97 53.00 1qg3A 195 53.62 b.1.2.1,b.1.2.1 21993,21994 1ehsA 48 54.37 g.2.1.1 43998 2ii1A 301 54.97 1zd7A 159 55.04 1y3nA 490 55.83 c.94.1.1 122597 1epaA 164 58.83 b.60.1.1 27128 2jixB 225 59.06 1xovA 326 60.57 b.34.11.4,c.56.5.6 122206,122207 1xe7A 203 64.46 b.82.1.16 115213 2rb8A 104 64.69 1apyB 141 65.38 1wraA 308 66.50 d.157.1.8 121190 1ni5A 433 66.85 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2f4lA 297 66.94 b.23.3.1 132927 1fd9A 213 67.14 d.26.1.1 59771 1zxfA 155 69.69 d.129.3.5 125771 1s1dA 331 70.91 b.67.3.1 98344 2cztA 167 70.91 2jn9A 105 72.03 1eerA 166 72.47 a.26.1.2 16846 1nxjA 183 72.47 c.8.7.1 86382 1x89A 178 73.98 b.60.1.1 121799 1q7gA 359 74.11 c.2.1.3,d.81.1.2 96038,96039 1qavA 90 74.46 b.36.1.1 24777 1hfuA 503 75.35 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1i2sA 282 76.03 e.3.1.1 71104 1uheA 97 77.30 2b8tA 223 78.89 c.37.1.24,g.39.1.14 128109,128110 2coiA 386 79.11 2qv2A 342 79.12 1llaA 628 80.58 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1nmeB 92 83.56 1o22A 170 85.82 d.238.1.1 86557 1ahsA 126 86.73 b.19.1.1 23794 2yzkA 178 86.74