# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2f5kA 102 0.7589 b.34.13.3 132995 2e63A 170 1.131 2ii1A 301 2.570 3b9tA 484 4.218 1l7lA 121 4.292 b.18.1.16 77790 1p2zA 968 5.088 b.121.2.2,b.121.2.2 93962,93963 1f35A 162 6.227 b.94.1.1 59628 1p30A 952 6.585 b.121.2.2,b.121.2.2 93964,93965 3c7bB 366 7.790 1jyhA 157 7.892 d.60.1.3 71956 2j44A 217 8.799 2obeA 932 8.814 2e70A 71 9.337 1u5fA 148 10.91 b.55.1.1 119542 2i9uA 439 13.34 2ckkA 127 13.66 1xneA 113 13.67 b.122.1.6 115579 2e5pA 68 13.73 1ugpB 226 15.70 b.34.4.4 107832 1zboA 210 17.04 b.122.1.10 124859 2d4nA 152 18.03 1m9uA 241 21.85 b.47.1.2 74601 2yueA 168 22.32 1wktA 88 22.79 b.11.1.2 23630 1krhA 338 22.98 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1b8mA 119 23.32 g.17.1.3 44797 2dxcA 126 23.51 2eqjA 66 23.52 1vpsA 289 23.55 b.121.6.1 23336 2yxxA 386 24.25 2qs8A 418 24.90 2j43A 219 24.93 1nb9A 147 25.16 b.43.5.1 85515 1rkiA 102 26.59 d.308.1.2 118776 2f4lA 297 27.52 b.23.3.1 132927 2cu2A 337 27.53 3b2tA 311 27.66 1m7sA 484 30.01 e.5.1.1 74574 2aneA 125 30.50 b.122.1.10 127046 1khiA 176 30.61 b.34.5.2,b.40.4.5 77408,77409 2p9oA 169 33.67 1p4oA 322 38.66 d.144.1.7 87775 2aenA 164 39.79 2do3A 69 41.83 b.34.5.5 131596 2vd8A 391 44.97 1qfjA 232 46.44 b.43.4.2,c.25.1.1 25655,31545 3bb6A 127 47.20 1kxlA 199 47.53 b.40.4.3 73155 2r6vA 191 48.37 2govA 195 48.53 d.60.1.4 135447 1qwlA 505 48.77 e.5.1.1 96483 2g3fA 421 49.06 2e5aA 347 49.64 1gvhA 396 50.50 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1gr3A 160 52.41 b.22.1.1 65476 2rc5A 314 52.47 2q09A 416 52.58 1mg7A 417 52.79 d.14.1.6,d.58.26.6 84954,84955 1k3rA 268 53.43 b.40.4.10,c.116.1.2 72018,72019 1vr8A 142 53.47 d.312.1.1 120445 2ol1A 147 56.16 3b2mA 295 57.84 1uwfA 158 58.19 b.2.3.2 119758 2vhjA 331 59.49 1f3lA 321 61.43 c.66.1.6 59630 2asuB 234 61.47 1ow1A 195 61.72 b.131.1.3 93625 1cruA 454 64.99 b.68.2.1 27617 1iseA 185 67.42 d.67.3.1 90691 1twiA 434 67.42 b.49.2.3,c.1.6.1 107399,107400 1ejxC 567 67.70 b.92.1.1,c.1.9.2 83184,83185 2bnmA 198 67.76 a.35.1.3,b.82.1.10 128835,128836 1ddjA 247 68.09 b.47.1.2 26362 1gweA 503 68.10 e.5.1.1 70667 1uscA 178 68.17 b.45.1.2 99860 1yliA 153 69.36 d.38.1.1 123651 1dkgA 197 72.38 b.73.1.1,h.1.9.1 27812,45626 1v30A 124 74.88 d.269.1.1 113496 2ee9A 95 75.14 1t17A 148 79.73 d.129.3.6 112215 2ozjA 114 83.22 2askA 113 84.12 2i5fA 109 85.19 3c7bA 417 85.59 2gfaA 119 85.67 b.34.9.1,b.34.9.1 135089,135090 1ua7A 422 86.38 b.71.1.1,c.1.8.1 107759,107760 1brwA 433 89.02 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626