# List of top-scoring protein chains for T0429.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1i4tD 192 1.715 c.37.1.8 61731 1e96A 192 1.723 c.37.1.8 32007 2diqA 110 4.480 b.34.9.1 131531 1q7eA 428 4.555 c.123.1.1 96035 2nnwA 376 4.673 1pt7A 437 5.257 c.123.1.1 95093 2bmjA 178 5.818 c.37.1.8 128797 1bpvA 112 6.123 b.1.2.1 22071 2jp2A 126 6.284 2iwrA 178 6.348 2c2hA 192 6.876 c.37.1.8 129668 1i4dD 192 7.007 c.37.1.8 61684 1hh4A 192 7.608 c.37.1.8 61037 1ryhA 203 7.804 c.37.1.8 98102 2nz8A 177 8.643 c.37.1.8 138837 1he1C 176 8.647 c.37.1.8 32003 2fjuA 178 8.716 c.37.1.8 133622 1g4uR 184 9.131 c.37.1.8 32005 2p2lA 188 10.19 c.37.1.8 139465 2ic5A 180 10.25 1mh1A 186 10.28 c.37.1.8 32002 2qmeA 179 10.52 2o4xB 91 13.07 1ds6A 192 13.11 c.37.1.8 32006 2e6nA 104 13.99 1gmiA 136 14.12 b.7.1.1 65309 2o4xA 217 15.05 1wl3A 299 15.90 2gtlM 217 16.58 b.61.7.1,g.12.1.1,h.1.32.1 135667,135668,135669 1vg3A 299 16.92 a.128.1.1 108601 1v4jA 299 17.02 a.128.1.1 100300 1v4kA 299 17.16 a.128.1.1 100302 1vg2A 299 17.46 a.128.1.1 108600 1wl2A 299 17.49 1wl0A 299 17.52 1wl1A 299 17.88 1vg7A 299 17.89 a.128.1.1 108605 1v4eA 299 18.23 a.128.1.1 100296 1v4iA 299 18.30 a.128.1.1 100299 1vg4A 299 18.35 a.128.1.1 108602 2azlA 299 18.37 1vg6A 299 18.48 a.128.1.1 108604 1wkzA 299 18.76 1v4hA 299 19.82 a.128.1.1 100298 2hqxA 246 20.50 b.34.9.1 136675 3byvA 377 21.03 2oiwA 136 22.79 2jrmA 65 23.31 2pthA 193 23.43 c.56.3.1 33793 1nhpA 447 23.59 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1npxA 447 25.37 c.3.1.5,c.3.1.5,d.87.1.1 30557,30558,40200 1f8wA 447 25.63 c.3.1.5,c.3.1.5,d.87.1.1 30561,30562,40202 2hveA 152 26.05 1nhqA 447 29.60 c.3.1.5,c.3.1.5,d.87.1.1 30551,30552,40197 1nhrA 447 29.98 c.3.1.5,c.3.1.5,d.87.1.1 30553,30554,40198 1i51B 105 35.47 1rdzA 337 37.17 e.7.1.1 42882 1of5A 221 38.52 d.17.4.2 86933 1ri5A 298 40.09 c.66.1.34 97502 1fsaA 337 40.27 e.7.1.1 42903 1kz8A 337 40.72 e.7.1.1 77633 5fbpA 335 41.27 e.7.1.1 42873 1yyzA 337 41.40 1frpA 335 42.01 e.7.1.1 42875 1levA 337 42.03 e.7.1.1 77911 1nuyA 337 42.14 e.7.1.1 86213 1fj9A 337 42.63 e.7.1.1 42907 1nhsA 447 46.04 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1zyqA 698 47.84 c.55.3.5,e.8.1.1 125846,125847 1x9mA 698 47.99 c.55.3.5,e.8.1.1 114999,115000 2c2zB 106 48.00 1t5jA 313 48.11 a.209.1.1 99125 2j0vA 212 49.27 2ajqA 704 50.72 2qr4A 587 51.85 2hvdA 152 52.53 d.58.6.1 136801 1z1zA 131 56.04 d.323.1.1 124366 1ucnA 152 57.07 d.58.6.1 99183 2ql9B 97 60.29 1ybyA 215 60.32 2nw5A 360 63.04 1ehsA 48 64.71 g.2.1.1 43998 2yxoA 267 68.13 2yuoA 78 68.92 1z41A 338 72.15 c.1.4.1 124421 2cjuH 121 75.37 1qtnB 95 78.29 2ctuA 73 80.36 1ijlA 123 81.49 a.133.1.2 66163 1mo7A 213 83.77 d.220.1.1 85028 1usyE 208 84.30 c.94.1.1 113426 2pboA 400 85.98 1j0sA 157 86.49 b.42.1.2 90747 1usyH 208 88.13 c.94.1.1 113429