# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.1216 b.34.9.1 84964 2bkdN 134 0.3351 2qdeA 397 1.535 1khcA 147 2.387 b.34.9.2 68608 2qqrA 118 2.683 2f5kA 102 2.883 b.34.13.3 132995 2hqxA 246 3.169 b.34.9.1 136675 1rkiA 102 3.431 d.308.1.2 118776 2gfaA 119 3.696 b.34.9.1,b.34.9.1 135089,135090 2e63A 170 4.180 2yueA 168 5.115 2yzkA 178 6.725 1t3lA 337 8.071 b.34.2.1,c.37.1.1 106358,106359 1dqsA 393 8.770 e.22.1.1 43347 2geeA 203 10.17 3b7yA 153 11.00 2qdxA 257 11.42 2pceA 386 12.57 3b6nA 187 13.51 2a4dA 160 13.65 d.20.1.1 126152 2d9rA 104 14.04 b.129.2.1 131350 1or8A 340 14.17 c.66.1.6 93451 2cdpA 160 15.03 1sc3B 88 15.16 1wgsA 133 15.56 b.34.13.3 114622 1n9bA 265 15.68 e.3.1.1 85463 2ef5A 290 16.19 2atfA 200 16.31 b.82.1.19 127290 2dkoB 103 16.47 2ii1A 301 16.91 1qtnB 95 17.34 1fdrA 248 17.97 b.43.4.2,c.25.1.1 25653,31543 2b5hA 200 18.12 b.82.1.19 127894 3ct2A 382 18.26 2ccvA 101 18.72 b.154.1.1 130258 1nmeB 92 18.83 2z4tA 514 19.02 1mi8A 158 19.68 b.86.1.2 91279 1oihA 301 19.72 b.82.2.5 93051 2i49A 429 20.06 1iysA 262 20.16 e.3.1.1 90723 2h41A 95 21.20 2f1lA 187 21.69 b.41.1.4,b.43.3.4 132780,132781 2btlA 134 22.62 b.148.1.1 129154 1ul7A 102 22.95 d.129.6.1 99540 2og5A 357 23.02 1z94A 147 23.55 d.129.3.5 124740 2eiyA 308 23.62 1f3lA 321 24.60 c.66.1.6 59630 2fytA 340 24.66 c.66.1.6 134391 2jepA 395 25.02 1ekfA 365 25.80 e.17.1.1 59445 1c7sA 858 26.40 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1d1nA 99 27.70 b.43.3.1 25718 2jz2A 66 28.81 3bpoC 314 29.23 2e2dC 180 30.14 b.40.3.1 131980 2jixB 225 31.01 1hzoA 271 32.48 e.3.1.1 71092 1bkzA 135 34.37 b.29.1.3 24202 2yrvA 117 36.58 2zdiC 151 36.72 2eqkA 85 37.46 1xneA 113 37.90 b.122.1.6 115579 2qr6A 393 38.21 2dscA 212 38.68 1a8pA 258 38.98 b.43.4.2,c.25.1.1 25654,31544 2b0vA 153 39.79 d.113.1.1 127650 2j12A 194 40.00 b.21.1.1 137932 1t46A 313 41.26 d.144.1.7 106397 1k12A 158 42.03 b.18.1.15 71978 1d3yA 301 42.25 e.12.1.1 43252 2du2A 374 43.53 1nwbA 124 43.78 b.124.1.1 86296 1yleA 342 44.47 d.108.1.8 123647 1jeyB 565 47.65 b.131.1.2,c.62.1.4 90372,90373 1wrvA 308 48.87 1g6aA 271 49.31 e.3.1.1 42704 2f4lA 297 49.48 b.23.3.1 132927 1bueA 265 49.63 e.3.1.1 42727 1es6A 296 49.91 b.31.1.1,b.31.1.1 83048,83049 1fxkC 133 50.57 a.2.5.1 15702 1cq3A 233 51.28 b.27.1.1 23923 2jn9A 105 52.26 2pc8A 400 54.49 1kjwA 295 55.02 b.34.2.1,c.37.1.1 68643,68644 1pyoB 105 55.05 1wmsA 177 56.13 c.37.1.8 109414 1bquA 215 59.13 b.1.2.1,b.1.2.1 22066,22067 1j1xH 114 59.30 b.1.1.1 77063 1u5xA 140 59.65 b.22.1.1 113055 1n08A 163 60.06 b.43.5.1 79730 1iznB 277 60.47 e.43.1.2 83848 2dyjA 95 61.31 2j2jA 197 61.41 1xkiA 162 61.86 b.60.1.1 115408 1bbpA 173 62.62 b.60.1.1 27147 2bcfA 276 62.92 2vngA 180 64.79 1y9lA 115 64.97 3cpnA 330 66.21 1ir3A 306 66.87 d.144.1.7 41702 3cswA 285 67.35 1zruA 264 68.65 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 1k3rA 268 69.30 b.40.4.10,c.116.1.2 72018,72019 1uwfA 158 69.64 b.2.3.2 119758 1d5yA 292 69.84 a.4.1.8,a.4.1.8,d.60.1.2 16055,16056,39532 1ok0A 74 70.26 b.5.1.1 93191 1fna 93 70.47 1a0gA 282 71.15 e.17.1.1 43276 1l1qA 186 71.45 c.61.1.1 77653 1wueA 386 72.81 c.1.11.2,d.54.1.1 114892,114893 2q1mA 130 74.29 1u7iA 136 74.45 d.32.1.7 107724 1tr7A 164 75.39 b.2.3.2 119328 2igbA 179 76.02 1tenA 90 77.16 b.1.2.1 21990 1d1gA 168 78.19 c.71.1.1 34889 1ten 90 78.45 1hoe 74 78.96 1jatB 138 79.06 d.20.1.1 62819 2yvpA 182 79.51 2dtrA 226 80.28 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1huqA 164 80.74 c.37.1.8 32020 1zxfA 155 81.13 d.129.3.5 125771 1jdcA 429 81.26 b.71.1.1,c.1.8.1 27789,28776 1wzvA 155 81.93 d.20.1.1 121529 1a6jA 163 82.94 d.112.1.1 40915 1ep0A 185 83.59 b.82.1.1 28080 1f6fB 210 83.72 b.1.2.1,b.1.2.1 22033,22034 1uwwA 191 84.96 b.18.1.23 108079 1uyjA 296 85.41 f.8.1.2 108143 2fug5 207 86.67 1zn8A 180 86.77 c.61.1.1 125376 2bxxA 134 86.95 b.148.1.1 129446 1w44A 331 87.25 c.37.1.11 114147 1sx5A 244 87.55 c.52.1.2 99023 1ds1A 324 88.84 b.82.2.2 28127 2r7gA 347 89.88 2p4pA 86 89.94