# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qdeA 397 0.04477 1mhnA 59 0.1647 b.34.9.1 84964 2bkdN 134 1.153 2f5kA 102 1.458 b.34.13.3 132995 2pceA 386 1.820 2dkoB 103 1.999 3ct2A 382 2.244 1dqsA 393 2.805 e.22.1.1 43347 1sc3B 88 3.484 1nmeB 92 3.763 1qtnB 95 4.169 2dscA 212 4.453 2atfA 200 4.686 b.82.1.19 127290 2yzkA 178 5.046 1jeyB 565 6.284 b.131.1.2,c.62.1.4 90372,90373 1or8A 340 6.727 c.66.1.6 93451 1sznA 417 6.733 b.71.1.1,c.1.8.1 106162,106163 1ul7A 102 7.235 d.129.6.1 99540 2qqrA 118 7.528 2yvpA 182 7.913 2gfaA 119 8.040 b.34.9.1,b.34.9.1 135089,135090 1bheA 376 8.438 b.80.1.3 28030 1pyoB 105 9.150 2e63A 170 9.487 1iysA 262 9.731 e.3.1.1 90723 2nyuA 196 10.00 2b5hA 200 11.28 b.82.1.19 127894 1j0fA 100 11.31 c.47.1.14 90739 1mi8A 158 11.65 b.86.1.2 91279 1khcA 147 13.71 b.34.9.2 68608 2qr6A 393 15.86 2hqxA 246 16.57 b.34.9.1 136675 2baaA 243 16.84 d.2.1.1 36243 1uasA 362 17.10 b.71.1.1,c.1.8.1 88388,88389 1hzoA 271 17.45 e.3.1.1 71092 1atiA 505 17.98 c.51.1.1,d.104.1.1 33196,40745 1ehsA 48 18.04 g.2.1.1 43998 1n9bA 265 18.29 e.3.1.1 85463 2hhiA 204 19.38 1m70A 190 19.62 a.3.1.4,a.3.1.4 91200,91201 2inpA 494 20.04 3b7yA 153 20.08 2yueA 168 22.19 2iwvA 281 22.29 1f3lA 321 22.30 c.66.1.6 59630 1w5rA 278 22.37 d.3.1.5 120643 1bueA 265 23.01 e.3.1.1 42727 1vk6A 269 26.13 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1wu7A 434 30.52 c.51.1.1,d.104.1.1 121275,121276 1sx5A 244 31.97 c.52.1.2 99023 2zaiA 497 32.01 2jz2A 66 32.78 1uokA 558 34.47 b.71.1.1,c.1.8.1 27801,28788 1rkiA 102 35.12 d.308.1.2 118776 1f0iA 504 35.57 d.136.1.2,d.136.1.2 59566,59567 2qddA 378 36.10 1hxvA 113 36.34 d.26.1.1 71089 1d1nA 99 37.10 b.43.3.1 25718 2jepA 395 37.74 1wgsA 133 39.41 b.34.13.3 114622 2qdxA 257 41.36 2cpcA 113 41.80 2b0vA 153 42.29 d.113.1.1 127650 1a0qH 217 42.98 b.1.1.1,b.1.1.2 20287,21279 2ze0A 555 43.71 1wryA 121 44.98 1bag 425 45.30 1c7qA 445 46.03 c.80.1.2 35307 1xovA 326 46.31 b.34.11.4,c.56.5.6 122206,122207 1mucA 373 47.92 c.1.11.2,d.54.1.1 29236,38880 2pc8A 400 48.01 1o22A 170 48.56 d.238.1.1 86557 1x84A 189 49.52 d.113.1.2 121795 3cfbB 213 49.75 2o5hA 136 50.91 1ds1A 324 51.25 b.82.2.2 28127 1g2qA 187 52.33 c.61.1.1 65117 2d9rA 104 52.92 b.129.2.1 131350 2fytA 340 53.19 c.66.1.6 134391 1w23A 360 54.66 c.67.1.4 114088 1oihA 301 54.88 b.82.2.5 93051 1z65A 30 56.18 1vc3B 97 56.67 1avgI 142 57.04 b.60.1.3 27229 2du2A 374 58.18 1g6aA 271 58.87 e.3.1.1 42704 1rlwA 126 59.05 b.7.1.1 23177 1ngzB 220 59.49 b.1.1.1,b.1.1.2 80502,80503 1n2eA 300 59.57 c.26.1.4 85268 1xiyA 182 59.90 c.47.1.10 122022 1v0wA 506 60.29 d.136.1.2,d.136.1.2 108220,108221 1zjaA 557 61.99 1p8kZ 254 62.71 d.95.2.1,d.95.2.1 94361,94362 1t3lA 337 62.72 b.34.2.1,c.37.1.1 106358,106359 1uok 558 62.85 2rh0A 157 63.31 1zsyA 357 63.39 2ywqA 105 63.58 1zldA 120 64.11 3b3fA 341 64.24 2oaiA 94 66.44 1vqoQ 96 67.98 b.34.5.1 120378 2qgoA 141 69.35 1wueA 386 69.95 c.1.11.2,d.54.1.1 114892,114893 2a4dA 160 70.56 d.20.1.1 126152 3c86A 328 70.57 2jejA 358 70.70 d.240.1.1,e.8.1.7 138284,138285 3c5iA 369 70.84 2ux0A 143 71.31 1zd7A 159 71.36 1lnsA 763 71.59 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2ps2A 371 73.12 2jixB 225 73.51 1uwfA 158 74.09 b.2.3.2 119758 1d1gA 168 74.51 c.71.1.1 34889 2f1cX 286 75.68 1nxcA 478 76.38 a.102.2.1 92293 2qg3A 208 77.53 2ip2A 334 77.73 2cw5A 255 78.07 1d3cA 686 78.60 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2cdpA 160 78.66 2j12A 194 79.18 b.21.1.1 137932 2zbvA 263 79.61 1x3lA 440 81.74 1p0kA 349 82.36 c.1.4.1 87648 2p1zA 180 83.63 1d3yA 301 86.54 e.12.1.1 43252 2c1wA 292 86.90 d.294.1.1 129644 2guyA 478 87.53 b.71.1.1,c.1.8.1 135754,135755 1sa3A 262 88.94 c.52.1.23 105400 2q6kA 283 89.12