# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.2076 b.34.9.1 84964 2qdeA 397 0.3335 2jepA 395 1.737 2bkdN 134 1.956 1khcA 147 2.171 b.34.9.2 68608 2pceA 386 3.455 3ct2A 382 4.188 2pc8A 400 7.923 2yzkA 178 8.003 2dkoB 103 8.192 1sc3B 88 8.512 1ekfA 365 8.826 e.17.1.1 59445 2hqxA 246 9.024 b.34.9.1 136675 2eiyA 308 9.407 2z4tA 514 10.22 1qtnB 95 10.47 1t3lA 337 10.77 b.34.2.1,c.37.1.1 106358,106359 1ul7A 102 11.03 d.129.6.1 99540 1nmeB 92 11.17 1dqsA 393 11.24 e.22.1.1 43347 2inpA 494 11.47 2qqrA 118 12.14 2geeA 203 13.04 1or8A 340 14.16 c.66.1.6 93451 2f5kA 102 15.59 b.34.13.3 132995 1jdcA 429 16.31 b.71.1.1,c.1.8.1 27789,28776 2e63A 170 17.76 1w5rA 278 19.39 d.3.1.5 120643 2yueA 168 20.07 1wrvA 308 21.21 1n9bA 265 21.93 e.3.1.1 85463 1pyoB 105 22.14 3b7yA 153 22.23 1bquA 215 22.43 b.1.2.1,b.1.2.1 22066,22067 1rkiA 102 22.83 d.308.1.2 118776 1sznA 417 23.09 b.71.1.1,c.1.8.1 106162,106163 3bpoC 314 23.36 2gfaA 119 24.48 b.34.9.1,b.34.9.1 135089,135090 1edgA 380 26.30 c.1.8.3 28807 2qdxA 257 27.43 1hzoA 271 29.66 e.3.1.1 71092 1iysA 262 30.08 e.3.1.1 90723 2ef5A 290 31.92 1uwwA 191 32.48 b.18.1.23 108079 2atfA 200 32.72 b.82.1.19 127290 2h41A 95 33.03 2b5iB 214 33.80 b.1.2.1,b.1.2.1 127896,127897 2qr6A 393 33.95 2i49A 429 34.24 1oihA 301 35.13 b.82.2.5 93051 1wgsA 133 35.75 b.34.13.3 114622 1a0gA 282 36.05 e.17.1.1 43276 2d9rA 104 36.94 b.129.2.1 131350 1a0qH 217 36.95 b.1.1.1,b.1.1.2 20287,21279 1f3lA 321 38.05 c.66.1.6 59630 2hhiA 204 39.40 2jixB 225 39.50 3cswA 285 40.01 1d3yA 301 40.34 e.12.1.1 43252 1mucA 373 41.50 c.1.11.2,d.54.1.1 29236,38880 2b5hA 200 42.52 b.82.1.19 127894 1yzbA 182 42.94 2e2dC 180 43.47 b.40.3.1 131980 1j0hA 588 44.10 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1bkzA 135 44.13 b.29.1.3 24202 2b0vA 153 45.81 d.113.1.1 127650 1wueA 386 46.38 c.1.11.2,d.54.1.1 114892,114893 1kyqA 274 46.57 c.2.1.11,e.37.1.1 73281,73282 1iyeA 309 47.55 e.17.1.1 83786 1mi8A 158 48.49 b.86.1.2 91279 1gr3A 160 48.52 b.22.1.1 65476 2yvpA 182 50.07 1c7sA 858 51.13 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1jeyB 565 51.68 b.131.1.2,c.62.1.4 90372,90373 2jn9A 105 52.41 3c5iA 369 53.24 1tenA 90 53.44 b.1.2.1 21990 1o91A 178 53.96 b.22.1.1 92656 1fna 93 54.13 2occF 98 54.72 g.41.5.3 45256 1uasA 362 54.95 b.71.1.1,c.1.8.1 88388,88389 2f1lA 187 56.00 b.41.1.4,b.43.3.4 132780,132781 1zsyA 357 56.25 2g3mA 693 57.87 2a4dA 160 58.44 d.20.1.1 126152 1ten 90 59.87 2zhgA 154 61.00 1xkiA 162 61.46 b.60.1.1 115408 1ehsA 48 61.63 g.2.1.1 43998 2iwvA 281 63.09 2agaA 190 64.16 1ne8A 117 64.56 b.34.6.2 80424 1j0fA 100 65.12 c.47.1.14 90739 1x89A 178 65.28 b.60.1.1 121799 2og5A 357 66.37 1z94A 147 67.04 d.129.3.5 124740 1g6aA 271 67.69 e.3.1.1 42704 1f6fB 210 68.33 b.1.2.1,b.1.2.1 22033,22034 2du2A 374 69.08 1bueA 265 69.77 e.3.1.1 42727 2r7gA 347 72.91 2fytA 340 73.35 c.66.1.6 134391 2a1hA 365 73.46 e.17.1.1 125997 1bbpA 173 77.19 b.60.1.1 27147 2dscA 212 77.80 2oqyA 391 78.53 1j1xH 114 79.72 b.1.1.1 77063 3b6nA 187 82.39 1d1nA 99 82.99 b.43.3.1 25718 3b3fA 341 83.13 2hlyA 207 84.16 1lkeA 184 86.57 b.60.1.1 84622 2cdpA 160 88.47 2j12A 194 88.73 b.21.1.1 137932 1kjwA 295 88.92 b.34.2.1,c.37.1.1 68643,68644 2ccvA 101 88.93 b.154.1.1 130258