# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qdeA 397 0.7774 1khcA 147 1.713 b.34.9.2 68608 2z4tA 514 1.898 2bkdN 134 1.960 2jn9A 105 2.908 3b7yA 153 3.211 1mhnA 59 3.396 b.34.9.1 84964 1ekfA 365 3.924 e.17.1.1 59445 2e63A 170 4.250 2yueA 168 4.449 1or8A 340 5.734 c.66.1.6 93451 2e2dC 180 5.802 b.40.3.1 131980 2pc8A 400 7.668 2dkoB 103 7.981 1f3lA 321 9.851 c.66.1.6 59630 2fytA 340 10.11 c.66.1.6 134391 2oltA 227 10.55 1qtnB 95 11.32 1uasA 362 11.40 b.71.1.1,c.1.8.1 88388,88389 1n9bA 265 13.34 e.3.1.1 85463 2dscA 212 13.57 2ov6A 101 13.60 1j0hA 588 13.85 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2pceA 386 14.51 1sznA 417 14.78 b.71.1.1,c.1.8.1 106162,106163 1iysA 262 14.91 e.3.1.1 90723 2r7gA 347 14.94 1dqsA 393 17.15 e.22.1.1 43347 2agaA 190 19.77 1pyoB 105 20.05 1nmeB 92 20.34 1sc3B 88 20.89 1m70A 190 21.17 a.3.1.4,a.3.1.4 91200,91201 1xovA 326 21.95 b.34.11.4,c.56.5.6 122206,122207 1z94A 147 23.72 d.129.3.5 124740 1kyqA 274 24.97 c.2.1.11,e.37.1.1 73281,73282 1yrlA 491 25.09 1yzbA 182 25.49 1wryA 121 26.10 2fqxA 318 26.12 2b0vA 153 26.40 d.113.1.1 127650 2ii1A 301 26.96 1p5hA 428 27.26 c.123.1.1 87802 1o91A 178 27.85 b.22.1.1 92656 1mi8A 158 27.96 b.86.1.2 91279 1j5uA 136 28.05 d.208.1.1 71584 1x84A 189 28.59 d.113.1.2 121795 2qqrA 118 29.45 1d1nA 99 30.36 b.43.3.1 25718 2hqxA 246 30.37 b.34.9.1 136675 1gr3A 160 32.95 b.22.1.1 65476 2nscA 109 33.46 1atiA 505 33.96 c.51.1.1,d.104.1.1 33196,40745 2ywqA 105 34.32 1jdcA 429 34.37 b.71.1.1,c.1.8.1 27789,28776 3butA 136 34.82 2ef5A 290 36.06 2geeA 203 37.71 2q37A 181 38.15 3bpoC 314 38.56 3bs7A 78 38.72 1g6aA 271 41.42 e.3.1.1 42704 2oauA 306 41.92 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 1yuwA 554 42.56 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1c7sA 858 44.06 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 2i8tA 167 46.03 1zsyA 357 47.05 1evlA 401 48.08 c.51.1.1,d.104.1.1 33202,40751 1bueA 265 49.40 e.3.1.1 42727 2yvpA 182 51.30 2i49A 429 53.43 2qdxA 257 53.47 2pu9A 110 53.97 3b3fA 341 54.59 1ovnA 248 55.05 a.71.1.1,c.47.1.7 93602,93603 2jixB 225 55.18 2jejA 358 55.67 d.240.1.1,e.8.1.7 138284,138285 1p8kZ 254 55.73 d.95.2.1,d.95.2.1 94361,94362 1ermA 263 56.32 e.3.1.1 42690 1c7qA 445 58.09 c.80.1.2 35307 1xvaA 292 58.59 c.66.1.5 34183 1hzoA 271 60.00 e.3.1.1 71092 2o70A 174 63.05 2zaiA 497 65.24 1vybA 238 70.08 d.151.1.1 108897 2jepA 395 72.76 1vmeA 410 72.83 c.23.5.1,d.157.1.3 108893,108894 2b5oA 402 73.81 1wueA 386 76.09 c.1.11.2,d.54.1.1 114892,114893 1wkuA 254 76.97 1p35A 299 77.35 b.28.1.1 23925 1n08A 163 78.02 b.43.5.1 79730 1q7eA 428 79.92 c.123.1.1 96035 1lcyA 325 80.00 b.36.1.4,b.47.1.1 73834,73835 1jv1A 505 81.08 c.68.1.5 71892 2omlA 189 81.70 1eqcA 394 81.79 c.1.8.3 28811 1z6bA 154 84.35 d.38.1.6 124510 1xneA 113 85.94 b.122.1.6 115579 1bquA 215 87.42 b.1.2.1,b.1.2.1 22066,22067 2f4nA 273 88.06 2e4tA 519 88.65 1j7lA 264 89.32 d.144.1.6 62697