# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2dkoB 103 0.4783 3b7yA 153 0.8927 2qdeA 397 1.713 1ekfA 365 2.618 e.17.1.1 59445 1iyeA 309 3.342 e.17.1.1 83786 1ul7A 102 4.399 d.129.6.1 99540 1pyoB 105 4.417 2e2dC 180 4.567 b.40.3.1 131980 1khcA 147 5.517 b.34.9.2 68608 1uasA 362 6.205 b.71.1.1,c.1.8.1 88388,88389 2agaA 190 7.809 1j0hA 588 8.371 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1atiA 505 8.929 c.51.1.1,d.104.1.1 33196,40745 2jn9A 105 9.001 1sznA 417 9.290 b.71.1.1,c.1.8.1 106162,106163 3butA 136 9.746 1mhnA 59 10.98 b.34.9.1 84964 2eiyA 308 12.04 1nmeB 92 12.34 2e63A 170 13.51 2fqxA 318 16.73 2oltA 227 16.81 2bkdN 134 18.50 2fytA 340 18.76 c.66.1.6 134391 1or8A 340 18.86 c.66.1.6 93451 2yueA 168 19.42 1qtnB 95 20.03 1wrvA 308 21.27 1v86A 95 21.43 d.15.1.1 108421 1vqoQ 96 21.43 b.34.5.1 120378 1jj2P 95 21.47 b.34.5.1 63101 1yrlA 491 23.56 2dscA 212 23.58 2p2vA 288 24.49 1j0fA 100 25.50 c.47.1.14 90739 2q37A 181 25.64 1rkiA 102 27.97 d.308.1.2 118776 3bs7A 78 28.06 2hqxA 246 29.73 b.34.9.1 136675 2gagD 99 30.56 2dmcA 116 31.61 b.1.18.10 131572 1yzbA 182 32.63 1rlwA 126 32.92 b.7.1.1 23177 2pc8A 400 33.17 2z4tA 514 33.29 1rypG 244 34.22 d.153.1.4 41938 1vsd 152 34.27 2e74D 179 35.23 b.33.1.1,f.23.12.1 132049,132050 1dqsA 393 37.17 e.22.1.1 43347 2hqvA 195 39.81 e.62.1.2 136674 1i6pA 220 40.43 c.53.2.1 61848 1ewkA 490 40.78 c.93.1.1 35712 1sc3B 88 41.88 2a1hA 365 43.09 e.17.1.1 125997 1xovA 326 43.25 b.34.11.4,c.56.5.6 122206,122207 1lqsL 157 43.40 a.26.1.3 74192 1yarA 233 43.81 d.153.1.4 122837 2govA 195 44.49 d.60.1.4 135447 2e8oA 103 45.89 2r7gA 347 45.98 2h41A 95 47.36 1z94A 147 47.37 d.129.3.5 124740 2okuA 131 49.02 1e58A 249 49.71 c.60.1.1 59262 2j0fA 482 49.92 1hxvA 113 50.98 d.26.1.1 71089 1jxcA 68 51.10 g.3.7.5 77201 1hxs3 237 51.53 2ccvA 101 54.47 b.154.1.1 130258 2omlA 189 54.48 2coiA 386 55.06 1kyqA 274 58.63 c.2.1.11,e.37.1.1 73281,73282 2jepA 395 58.74 1sgvA 316 58.80 b.122.1.1,d.265.1.2 98858,98859 2pu9A 110 62.21 1cn3F 29 63.39 2v74B 346 64.56 1xuvA 178 67.24 d.129.3.5 116069 1x84A 189 70.08 d.113.1.2 121795 2oap1 511 70.27 2yxbA 161 70.79 1edgA 380 71.17 c.1.8.3 28807 2f1lA 187 72.86 b.41.1.4,b.43.3.4 132780,132781 2ii1A 301 74.06 1sz9A 144 74.36 a.118.9.4 106139 1p35A 299 75.98 b.28.1.1 23925 2pceA 386 76.02 2i0xA 85 76.57 1u5xA 140 76.62 b.22.1.1 113055 1kx5B 102 77.16 a.22.1.1 77594 2hvqA 335 77.76 2occF 98 79.85 g.41.5.3 45256 1uouA 474 80.32 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2ef5A 290 81.02 1o91A 178 82.66 b.22.1.1 92656 1qu5A 182 83.14 b.26.1.2 23922 1k8wA 327 85.82 b.122.1.1,d.265.1.2 83094,90388 1fsbA 40 85.86 g.3.11.1 44283 2co3A 137 86.67 b.2.3.2 130665 2zivA 311 87.05 3b3fA 341 87.63 1iysA 262 87.69 e.3.1.1 90723 1v5sA 126 88.67 d.129.6.1 108384 1pujA 282 88.96 c.37.1.8 88294