# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ntkA	222	0.5335	d.153.2.1	138583
2rh0A	157	5.127		
1kuuA	202	5.778	d.153.2.1	73019
1a0jA	223	12.07	b.47.1.2	26002
1ym0A	238	12.44		
1eq9A	222	12.53	b.47.1.2	26068
1azzA	226	13.98	b.47.1.2	26072
1wgvA	124	14.79	b.15.1.4	114624
2bdgA	223	24.32		
1jykA	254	24.41	c.68.1.13	67458
2jn9A	105	24.54		
1pq7A	224	24.69	b.47.1.2	95002
2ckkA	127	24.88		
1cdzA	96	24.97	c.15.1.1	30925
1qqhA	144	25.92	b.91.1.1	28404
1m26A	133	29.40		
2gs8A	317	30.11		
1rtfB	252	30.84		
1hs6A	611	35.62	a.118.1.7,b.98.1.1,d.92.1.13	61233,61234,61235
2exnA	136	35.64	b.165.1.1	132562
1ad0A	213	37.03	b.1.1.1,b.1.1.2	20124,21154
1oqkA	97	37.68	b.137.1.1	93419
1bqyA	234	38.31	b.47.1.2	26332
2a31A	223	42.99	b.47.1.2	126068
1rrpB	134	44.09	b.55.1.3	26995
1nj4A	363	44.68	b.105.1.1,e.3.1.1	80545,80546
2qsxA	218	45.95		
2a8jA	420	47.97		
1gvzA	237	48.23	b.47.1.2	76360
1a4jB	219	49.64	b.1.1.1,b.1.1.2	20233,21245
2hlcA	230	51.75	b.47.1.2	26074
1dpoA	223	52.45	b.47.1.2	25975
1d4vB	163	52.88	b.22.1.1	23884
1gj7B	253	52.91		
1r5tA	142	53.37	c.97.1.1	104812
1hztA	190	57.54	d.113.1.2	61459
1f7zA	233	60.19	b.47.1.2	59681
1b4kA	337	60.80	c.1.10.3	29184
2c3gA	98	62.86		
1qppA	218	62.92	b.1.11.1,b.7.2.1	22320,23202
1ejnA	253	67.61	b.47.1.2	26356
1jofA	365	69.18	b.69.10.1	71775
1fi8A	228	70.25	b.47.1.2	26374
1axsA	211	70.62	b.1.1.1,b.1.1.2	20200,21216
1ah1	129	71.34		
1o7dE	126	73.81		
2g3rA	123	74.78	b.34.9.1,b.34.9.1	134570,134571
2jwhA	48	75.66		
2cb4A	291	77.11		
1m9uA	241	78.01	b.47.1.2	74601
1i7kA	179	79.76	d.20.1.1	61889
1adeA	431	80.03	c.37.1.10	32213
1jotA	133	80.93		
1itcA	516	82.72	b.3.1.1,c.1.8.1	83705,83706
1ugxA	133	82.97		
2p5dA	147	86.03		
1w5nA	337	86.67		
2jz2A	66	89.68		
1nbcA	155	89.73	b.2.2.2	22390