# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2f5vA	595	2.499	c.3.1.2,d.16.1.1	133010,133011
2ov6A	101	3.298		
1zxuA	217	6.984	d.23.1.2	125796
2ex4A	241	7.676	c.66.1.42	132516
1ptq	50	7.866		
2imgA	151	7.940		
1th8A	145	9.157	d.122.1.3	106908
2pndA	119	10.48		
1ptqA	50	11.21	g.49.1.1	45349
1gd1O	334	11.75	c.2.1.3,d.81.1.1	29962,39877
1zzwA	149	22.06		
2b4yA	271	22.29	c.31.1.5	127868
2gxaA	274	22.70		
1rxdA	159	24.56	c.45.1.1	111959
2cveA	191	24.83	d.14.1.11,d.58.11.2	130869,130870
1wrmA	165	24.83		
2ov0A	105	27.69		
2hxpA	155	27.89		
1udzA	182	40.44	b.51.1.1	99239
1id2A	106	41.11	b.6.1.1	62288
1tif	78	41.14		
1yz4A	160	43.42		
1oktA	211	43.97	a.45.1.1,c.47.1.5	93272,93273
1tifA	78	46.69	d.15.8.1	37836
2nt2A	145	47.42		
2i6jA	161	48.79		
2i4rA	102	48.98		
1v5pA	126	49.24	b.55.1.1	108382
2rh0A	157	49.98		
1xtpA	254	50.69	c.66.1.42	116031
2idqA	105	51.22		
1wnyA	186	51.86		
1i8dA	213	52.45	b.43.4.3,b.43.4.3	61953,61954
2e0tA	151	52.68		
1sfdA	105	54.70	b.6.1.1	105480
2ajgA	196	58.84		
1wkaA	147	59.09	b.51.1.1	120978
2ahrA	259	59.88	a.100.1.10,c.2.1.6	126775,126776
2oq5A	232	61.45		
1o22A	170	63.92	d.238.1.1	86557
2ajtA	500	63.92	b.43.2.2,c.85.1.2	126894,126895
1viuA	203	64.12	d.113.1.1	100771
1wr8A	231	64.12	c.108.1.10	114836
2b9uA	176	64.18		
1rz1A	161	68.17	b.45.1.2	98124
1ctfA	74	68.77	d.45.1.1	38759
2p84A	145	70.39		
1vhrA	184	72.96	c.45.1.1	32651
1g2qA	187	73.50	c.61.1.1	65117
2p4dA	172	74.06		
2gbaA	105	75.31		
2esbA	188	76.18		
1iq9A	61	76.77	g.7.1.1	90669
2otuA	115	77.40		
1rlzA	369	78.46	c.31.1.1	104989
2hcmA	164	79.07		
2eyuA	261	79.78		
1ao5A	237	80.65	b.47.1.2	26334
1id0A	152	81.36	d.122.1.3	66111
1c9kA	180	84.35	c.37.1.11	32363
2i5tA	188	85.63		
1az6A	36	87.48	g.3.8.1	44184
1edqA	540	89.15	b.1.18.2,c.1.8.5,d.26.3.1	21873,29002,38436
1extA	162	89.26	g.24.1.1,g.24.1.1,g.24.1.1	44900,44901,44902