# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2imgA	151	4.605		
2ov6A	101	5.798		
2f5vA	595	7.196	c.3.1.2,d.16.1.1	133010,133011
1zxuA	217	8.868	d.23.1.2	125796
2gxaA	274	9.728		
1zzwA	149	10.40		
2hxpA	155	13.59		
1ptq	50	15.65		
1th8A	145	16.24	d.122.1.3	106908
1wrmA	165	16.78		
1gd1O	334	18.98	c.2.1.3,d.81.1.1	29962,39877
1ptqA	50	21.99	g.49.1.1	45349
2pndA	119	23.52		
1yz4A	160	23.58		
2nt2A	145	27.21		
2ov0A	105	28.63		
2p4dA	172	28.89		
2i6jA	161	34.05		
1rxdA	159	34.36	c.45.1.1	111959
2gw4B	162	36.85		
2cveA	191	41.56	d.14.1.11,d.58.11.2	130869,130870
1bqkA	124	43.53	b.6.1.1	22889
2ex4A	241	44.05	c.66.1.42	132516
2e0tA	151	44.25		
2b4yA	271	47.86	c.31.1.5	127868
2esbA	188	48.86		
2hcmA	164	55.51		
1xmzA	241	56.45		
2i5tA	188	60.97		
1id0A	152	62.76	d.122.1.3	66111
1oktA	211	64.52	a.45.1.1,c.47.1.5	93272,93273
1p1pA	25	68.83	j.30.1.3	46227
1y5iB	512	68.85	d.58.1.5	122641
1viuA	203	68.86	d.113.1.1	100771
1vhrA	184	70.46	c.45.1.1	32651
2i4rA	102	71.15		
1o22A	170	71.81	d.238.1.1	86557
1rlzA	369	71.88	c.31.1.1	104989
1udzA	182	74.25	b.51.1.1	99239
2yzkA	178	74.90		
1v5pA	126	75.05	b.55.1.1	108382
1llaA	628	76.73	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1fpzA	212	78.66	c.45.1.1	59976
1ctfA	74	79.95	d.45.1.1	38759
2ib5A	233	80.81		
1fasA	61	82.31	g.7.1.1	44403
2idqA	105	84.54		
1tif	78	84.64		
2qdeA	397	85.14		
1id2A	106	87.85	b.6.1.1	62288
2a46A	238	89.42