# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xtpA	254	3.021	c.66.1.42	116031
2r85A	334	3.106		
2r6oA	294	8.942		
2hxpA	155	12.64		
2e0tA	151	12.65		
2esbA	188	13.86		
1yz4A	160	14.05		
2f4dA	184	17.73		
2hcmA	164	19.01		
2d9rA	104	19.66	b.129.2.1	131350
1zxuA	217	21.00	d.23.1.2	125796
2ov0A	105	22.15		
2r0bA	154	24.06		
1bkzA	135	24.15	b.29.1.3	24202
1zckA	154	24.57		
2nt2A	145	24.97		
1zzwA	149	25.38		
1fpzA	212	25.62	c.45.1.1	59976
1q7eA	428	26.37	c.123.1.1	96035
1ptqA	50	28.19	g.49.1.1	45349
1wrmA	165	28.51		
2ib5A	233	30.50		
1pt7A	437	32.66	c.123.1.1	95093
1vhrA	184	33.33	c.45.1.1	32651
2idqA	105	35.20		
2imgA	151	35.48		
1p5hA	428	37.16	c.123.1.1	87802
1zuxA	224	37.40		
2cjaA	522	39.28		
1pa1A	310	39.99	c.45.1.2	94404
2i46A	161	40.03		
1ptq	50	40.09		
1i9sA	210	40.14	c.45.1.1	62099
1g7fA	298	41.44	c.45.1.2	60330
1oxdA	227	41.46	d.22.1.1	93687
2gbaA	105	41.54		
1az6A	36	50.02	g.3.8.1	44184
1p1pA	25	52.48	j.30.1.3	46227
2djfB	164	53.10		
2p4dA	172	53.75		
1bxaA	105	56.41	b.6.1.1	22839
2o57A	297	56.96		
2gw4B	162	58.55		
2ov6A	101	59.42		
1nhpA	447	59.60	c.3.1.5,c.3.1.5,d.87.1.1	30549,30550,40196
2yx0A	342	59.71		
1nhsA	447	60.81	c.3.1.5,c.3.1.5,d.87.1.1	30555,30556,40199
1ztsA	139	63.23		
1elqA	390	66.48	c.67.1.3	34436
2i6jA	161	66.65		
2qtxA	71	67.83		
1whtB	153	68.12		
2eaqA	90	68.19		
1u7iA	136	70.49	d.32.1.7	107724
1whsB	153	73.29		
2i6qA	517	74.04		
1bxvA	91	74.85	b.6.1.1	22875
1xmzA	241	75.52		
2zhgA	154	75.66		
1alyA	146	81.17	b.22.1.1	23856
1ljoA	77	81.53	b.38.1.1	73941
5eau	548	86.31		
1hslA	238	88.74	c.94.1.1	35804
1lyvA	306	88.95	c.45.1.2	74348
1pmyA	123	89.48	b.6.1.1	22888