# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2r6oA	294	3.425		
1yz4A	160	16.03		
2esbA	188	18.96		
2e0tA	151	22.32		
2hxpA	155	23.51		
1q7eA	428	24.35	c.123.1.1	96035
1yxyA	234	26.69	c.1.2.5	124203
1l0sA	90	28.43	b.81.2.1	73408
1ptqA	50	29.64	g.49.1.1	45349
1wrmA	165	29.76		
2hcmA	164	30.53		
1pt7A	437	33.77	c.123.1.1	95093
1p5hA	428	35.50	c.123.1.1	87802
2r0bA	154	36.64		
2nt2A	145	38.35		
2rh0A	157	38.69		
2f4dA	184	38.80		
1f28A	297	39.09	d.117.1.1	59608
1ptq	50	39.35		
1zzwA	149	39.84		
1vhrA	184	42.99	c.45.1.1	32651
1rkbA	173	43.11	c.37.1.1	111854
1ia9A	280	44.05	d.144.1.5	62113
1fpzA	212	46.33	c.45.1.1	59976
1i9sA	210	47.27	c.45.1.1	62099
1g7fA	298	48.89	c.45.1.2	60330
2qtxA	71	52.68		
1pa1A	310	56.62	c.45.1.2	94404
2imgA	151	56.64		
1whtB	153	56.68		
2ov0A	105	57.12		
2p7jA	287	57.95		
2uvjA	408	59.62		
1zckA	154	60.05		
1xtpA	254	60.37	c.66.1.42	116031
2zhgA	154	60.80		
1p1mA	406	61.11	b.92.1.4,c.1.9.9	87696,87697
1whsB	153	61.41		
2d9rA	104	68.10	b.129.2.1	131350
2i2oA	224	68.36		
1bkzA	135	71.11	b.29.1.3	24202
1lyvA	306	73.51	c.45.1.2	74348
1hvyA	288	74.11	d.117.1.1	41049
1rlzA	369	81.63	c.31.1.1	104989
2g3rA	123	82.03	b.34.9.1,b.34.9.1	134570,134571
2fymA	431	86.05	c.1.11.1,d.54.1.1	134379,134380
2yvpA	182	86.97		
2cjaA	522	86.99		
1p15A	253	87.03	c.45.1.2	93894