# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2r6oA	294	2.070		
1xtpA	254	8.344	c.66.1.42	116031
1zxuA	217	12.87	d.23.1.2	125796
2r85A	334	20.17		
1q7eA	428	21.35	c.123.1.1	96035
2cjaA	522	22.31		
1yxyA	234	24.02	c.1.2.5	124203
1pt7A	437	29.77	c.123.1.1	95093
1p5hA	428	29.88	c.123.1.1	87802
1yz4A	160	30.08		
2d9rA	104	34.01	b.129.2.1	131350
2ov0A	105	34.71		
2e0tA	151	36.31		
2hxpA	155	38.51		
1f28A	297	43.79	d.117.1.1	59608
1th8A	145	44.39	d.122.1.3	106908
2esbA	188	45.02		
1ptqA	50	46.99	g.49.1.1	45349
2hcmA	164	49.80		
2idqA	105	52.22		
3cwqA	209	52.76		
1y8oA	419	55.12		
1bkzA	135	55.64	b.29.1.3	24202
2ov6A	101	58.09		
1rlzA	369	60.99	c.31.1.1	104989
2abbA	364	61.34	c.1.4.1	126517
1rkbA	173	62.78	c.37.1.1	111854
2f4dA	184	74.65		
1ptq	50	74.87		
1zzwA	149	75.34		
1ztsA	139	75.86		
2gbaA	105	76.17		
1fpzA	212	77.49	c.45.1.1	59976
1g7sA	594	78.50	b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8	25712,25713,31032,32147
2r0bA	154	80.52		
2fymA	431	81.83	c.1.11.1,d.54.1.1	134379,134380
1wrmA	165	82.30		
1r62A	160	82.36	d.122.1.3	104816
2i46A	161	85.22		
1gnd	447	87.26		
2nt2A	145	88.08		
1zuxA	224	89.42