# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2r6oA	294	2.556		
1xtpA	254	6.740	c.66.1.42	116031
2hxpA	155	11.64		
2e0tA	151	11.68		
1yz4A	160	12.08		
2esbA	188	14.42		
2r85A	334	14.88		
1q7eA	428	16.64	c.123.1.1	96035
2hcmA	164	17.84		
1zxuA	217	19.11	d.23.1.2	125796
1fpzA	212	21.75	c.45.1.1	59976
2f4dA	184	22.20		
1zzwA	149	22.52		
1p5hA	428	26.66	c.123.1.1	87802
2r0bA	154	27.39		
2cjaA	522	27.44		
2d9rA	104	28.37	b.129.2.1	131350
1wrmA	165	28.91		
1pt7A	437	29.94	c.123.1.1	95093
2nt2A	145	30.45		
2imgA	151	30.51		
2ov0A	105	33.70		
1zckA	154	34.28		
2ov6A	101	34.28		
1vhrA	184	36.78	c.45.1.1	32651
1i9sA	210	41.94	c.45.1.1	62099
1ptqA	50	42.72	g.49.1.1	45349
1g7fA	298	47.68	c.45.1.2	60330
2i46A	161	50.74		
1f28A	297	51.19	d.117.1.1	59608
2p4dA	172	54.40		
1lyvA	306	55.94	c.45.1.2	74348
2idqA	105	56.12		
1yxyA	234	57.20	c.1.2.5	124203
1bkzA	135	60.43	b.29.1.3	24202
2i6jA	161	61.33		
1ptq	50	61.91		
1pa1A	310	62.75	c.45.1.2	94404
1whsB	153	63.91		
1whtB	153	67.01		
1ztsA	139	67.20		
2gbaA	105	73.88		
2abbA	364	75.55	c.1.4.1	126517
1rlzA	369	77.78	c.31.1.1	104989
3cblA	377	79.72		
2qtxA	71	81.98		
5eau	548	82.64		
2zhgA	154	89.46