# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2r6oA	294	2.471		
1q7eA	428	17.25	c.123.1.1	96035
2r85A	334	18.08		
2hxpA	155	18.48		
1xtpA	254	18.84	c.66.1.42	116031
1yz4A	160	19.05		
2esbA	188	19.39		
1zxuA	217	21.49	d.23.1.2	125796
1p5hA	428	22.75	c.123.1.1	87802
2e0tA	151	23.72		
1pt7A	437	25.13	c.123.1.1	95093
2d9rA	104	26.26	b.129.2.1	131350
2hcmA	164	30.25		
1ptqA	50	35.65	g.49.1.1	45349
2f4dA	184	37.14		
2cjaA	522	38.29		
2r0bA	154	40.21		
1g7fA	298	40.92	c.45.1.2	60330
1zzwA	149	42.46		
1pa1A	310	42.94	c.45.1.2	94404
1wrmA	165	44.86		
1fpzA	212	45.28	c.45.1.1	59976
1zckA	154	46.11		
1ptq	50	46.65		
2imgA	151	46.82		
2nt2A	145	48.43		
2ov0A	105	48.66		
2ov6A	101	50.83		
1i9sA	210	51.83	c.45.1.1	62099
1vhrA	184	54.48	c.45.1.1	32651
2yx0A	342	55.28		
2i46A	161	55.59		
1f28A	297	55.90	d.117.1.1	59608
1yxyA	234	56.21	c.1.2.5	124203
1p1mA	406	62.38	b.92.1.4,c.1.9.9	87696,87697
2v1lA	148	62.86		
1th8A	145	71.56	d.122.1.3	106908
1wqaA	455	72.58		
1bkzA	135	73.72	b.29.1.3	24202
1az6A	36	76.04	g.3.8.1	44184
2idqA	105	77.91		
1zuxA	224	81.18		
2cw8A	537	81.61		
2p4dA	172	84.20		
1rlzA	369	86.61	c.31.1.1	104989
2i6jA	161	88.35		
1hvyA	288	88.70	d.117.1.1	41049