# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hr6B	443	5.88e-31	d.185.1.1,d.185.1.1	61166,61167
1hr6A	475	7.19e-30	d.185.1.1,d.185.1.1	61164,61165
1ppjB	439	1.02e-29	d.185.1.1,d.185.1.1	104254,104255
3cx5A	431	1.44e-29		
1ppjA	446	1.74e-29	d.185.1.1,d.185.1.1	104252,104253
1qcrA	446	2.13e-29	d.185.1.1,d.185.1.1	59025,59026
1kb9A	431	2.40e-28	d.185.1.1,d.185.1.1	77311,77312
1ezvA	430	2.88e-28	d.185.1.1,d.185.1.1	59541,59542
1q2lA	939	3.89e-26	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
2g47A	990	5.59e-25		
3cx5B	352	2.94e-24		
1kb9B	352	1.34e-23	d.185.1.1,d.185.1.1	77313,77314
1ezvB	352	4.08e-22	d.185.1.1,d.185.1.1	59543,59544
2fgeA	995	1.00e-21	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	133430,133431,133432,133433
1f0yA	302	24.07	a.100.1.3,c.2.1.6	18793,30197
1zzkA	82	24.92	d.51.1.1	125909
2dpoA	319	25.39		
1fe0A	68	30.00	d.58.17.1	39345
1s69A	124	33.42	a.1.1.1	105305
1qqcA	773	35.06	c.55.3.5,e.8.1.1	33724,43013
1a6i	217	36.92		
1qupA	222	37.64	b.1.8.1,d.58.17.1	22301,39352
2qcoA	210	40.04		
2hdhA	293	40.21	a.100.1.3,c.2.1.6	18795,30199
1c7nA	399	41.10	c.67.1.3	34413
1dpeA	507	41.13	c.94.1.1	35799
2bv6A	142	51.96		
2vprA	207	53.65		
1idrA	136	54.98	a.1.1.1	62301
1v96A	149	55.54	c.120.1.1	119877
1tyhA	248	56.63	a.132.1.3	107458
1dlyA	164	58.65	a.1.1.1	14983
2z20A	432	59.11		
2qrwA	128	59.43		
1gdeA	389	60.46	c.67.1.1	60456
1g6uA	48	63.35	k.9.1.1	46425
1yakA	263	65.31	a.132.1.3	122833
2hp0A	466	66.48		
2gfnA	209	66.56	a.4.1.9,a.121.1.1	135101,135102
1tq4A	413	78.97	c.37.1.8	107201
2viaA	405	82.86		
2ge7A	108	84.51	d.254.1.2	135049
2ftuA	118	85.65	a.13.1.1	134082
2qcxA	263	88.59		
1jqoA	970	88.89	c.1.12.3	77160
1ic1A	190	89.79	b.1.1.3,b.1.1.4	21654,21690