# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 4.66e-31 d.185.1.1,d.185.1.1 61166,61167 1hr6A 475 5.09e-30 d.185.1.1,d.185.1.1 61164,61165 1ppjB 439 8.89e-30 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 1.02e-29 1qcrA 446 1.35e-29 d.185.1.1,d.185.1.1 59025,59026 1ppjA 446 1.54e-29 d.185.1.1,d.185.1.1 104252,104253 1kb9A 431 1.60e-28 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 1.83e-28 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 2.77e-26 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 4.35e-25 3cx5B 352 2.38e-24 1kb9B 352 1.05e-23 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 3.33e-22 d.185.1.1,d.185.1.1 59543,59544 2fgeA 995 9.68e-22 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1zzkA 82 20.71 d.51.1.1 125909 2qcoA 210 22.26 1f0yA 302 23.14 a.100.1.3,c.2.1.6 18793,30197 2dpoA 319 27.56 1qupA 222 29.59 b.1.8.1,d.58.17.1 22301,39352 1s69A 124 34.51 a.1.1.1 105305 1qqcA 773 35.41 c.55.3.5,e.8.1.1 33724,43013 1a6i 217 35.80 1fe0A 68 37.48 d.58.17.1 39345 1c7nA 399 37.50 c.67.1.3 34413 1idrA 136 40.93 a.1.1.1 62301 2hdhA 293 41.99 a.100.1.3,c.2.1.6 18795,30199 1v96A 149 49.85 c.120.1.1 119877 1gdeA 389 50.83 c.67.1.1 60456 1dpeA 507 53.61 c.94.1.1 35799 1tq4A 413 53.74 c.37.1.8 107201 2vprA 207 58.05 1tyhA 248 59.13 a.132.1.3 107458 1g6uA 48 59.67 k.9.1.1 46425 2hp0A 466 61.39 2bv6A 142 61.77 2z20A 432 64.33 1dlyA 164 66.71 a.1.1.1 14983 1j96A 323 67.31 c.1.7.1 71616 1yakA 263 69.41 a.132.1.3 122833 2gfnA 209 70.37 a.4.1.9,a.121.1.1 135101,135102 1xi9A 406 70.65 c.67.1.1 115355 2viaA 405 75.76 2qrwA 128 81.15 2ge7A 108 82.98 d.254.1.2 135049 1jqoA 970 83.07 c.1.12.3 77160