# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hr6B	443	5.69e-30	d.185.1.1,d.185.1.1	61166,61167
1hr6A	475	6.30e-29	d.185.1.1,d.185.1.1	61164,61165
1ppjB	439	9.06e-29	d.185.1.1,d.185.1.1	104254,104255
3cx5A	431	1.16e-28		
1qcrA	446	1.25e-28	d.185.1.1,d.185.1.1	59025,59026
1ppjA	446	1.45e-28	d.185.1.1,d.185.1.1	104252,104253
1kb9A	431	1.83e-27	d.185.1.1,d.185.1.1	77311,77312
1ezvA	430	2.01e-27	d.185.1.1,d.185.1.1	59541,59542
1q2lA	939	1.93e-25	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
2g47A	990	2.57e-24		
3cx5B	352	1.07e-23		
1kb9B	352	4.33e-23	d.185.1.1,d.185.1.1	77313,77314
1ezvB	352	1.37e-21	d.185.1.1,d.185.1.1	59543,59544
2fgeA	995	3.87e-21	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	133430,133431,133432,133433
1f0yA	302	18.05	a.100.1.3,c.2.1.6	18793,30197
2dpoA	319	22.25		
1zzkA	82	23.14	d.51.1.1	125909
2qcoA	210	28.99		
2hdhA	293	30.48	a.100.1.3,c.2.1.6	18795,30199
1qupA	222	31.85	b.1.8.1,d.58.17.1	22301,39352
1a6i	217	38.50		
1fe0A	68	38.72	d.58.17.1	39345
1qqcA	773	42.16	c.55.3.5,e.8.1.1	33724,43013
1dpeA	507	46.29	c.94.1.1	35799
1c7nA	399	47.70	c.67.1.3	34413
1tyhA	248	55.32	a.132.1.3	107458
1v96A	149	57.86	c.120.1.1	119877
2bv6A	142	59.21		
2hp0A	466	59.28		
2vprA	207	60.21		
1g6uA	48	60.60	k.9.1.1	46425
2z20A	432	61.80		
1s69A	124	62.28	a.1.1.1	105305
1idrA	136	70.45	a.1.1.1	62301
1c20A	128	71.26	a.4.3.1	16079
2qrwA	128	73.90		
2ge7A	108	73.97	d.254.1.2	135049
1j96A	323	78.50	c.1.7.1	71616
1dik	874	78.77		
1yakA	263	79.10	a.132.1.3	122833
2pidA	356	79.66		
1dlyA	164	80.18	a.1.1.1	14983
1gdeA	389	83.57	c.67.1.1	60456
2gfnA	209	83.79	a.4.1.9,a.121.1.1	135101,135102
1tq4A	413	84.39	c.37.1.8	107201
2dobA	83	85.41