# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 4.17e-38 d.185.1.1,d.185.1.1 61166,61167 1hr6A 475 9.84e-37 d.185.1.1,d.185.1.1 61164,61165 1ppjB 439 2.13e-36 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 2.29e-36 1ppjA 446 3.45e-36 d.185.1.1,d.185.1.1 104252,104253 1qcrA 446 4.57e-36 d.185.1.1,d.185.1.1 59025,59026 1kb9A 431 5.88e-35 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 7.78e-35 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 3.72e-32 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 1.12e-30 3cx5B 352 1.65e-29 1kb9B 352 8.97e-29 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 8.59e-27 d.185.1.1,d.185.1.1 59543,59544 2fgeA 995 3.69e-26 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1f0yA 302 10.23 a.100.1.3,c.2.1.6 18793,30197 1gdeA 389 15.49 c.67.1.1 60456 1zzkA 82 15.92 d.51.1.1 125909 1c7nA 399 16.34 c.67.1.3 34413 2dpoA 319 20.69 1s69A 124 21.67 a.1.1.1 105305 1qupA 222 22.39 b.1.8.1,d.58.17.1 22301,39352 2hdhA 293 23.20 a.100.1.3,c.2.1.6 18795,30199 1xi9A 406 28.10 c.67.1.1 115355 1tq4A 413 28.51 c.37.1.8 107201 1j96A 323 29.89 c.1.7.1 71616 1fe0A 68 36.06 d.58.17.1 39345 2yviA 111 40.26 1v8aA 265 40.95 c.72.1.2 100494 2z20A 432 44.17 1idrA 136 45.03 a.1.1.1 62301 1w7lA 422 45.74 c.67.1.1 109226 2qrwA 128 47.06 1vlpA 441 48.34 d.41.2.2,c.1.17.2 108840,108841 1v96A 149 49.95 c.120.1.1 119877 2ge7A 108 51.42 d.254.1.2 135049 1j5kA 89 53.70 d.51.1.1 71565 1tyhA 248 56.74 a.132.1.3 107458 2im5A 394 56.86 1zd0A 150 61.44 d.329.1.1 124927 2bv6A 142 63.01 1zcaA 359 63.41 a.66.1.1,c.37.1.8 124897,124898 1dpeA 507 66.51 c.94.1.1 35799 1fhvA 323 67.09 c.1.11.2,d.54.1.1 29235,38879 1us0A 316 68.99 c.1.7.1 99850 1zcbA 362 69.49 a.66.1.1,c.37.1.8 124901,124902 2qcoA 210 70.28 2pbfA 227 70.70 1j55A 95 71.06 a.39.1.2 77078 2hp0A 466 73.08 1yozA 116 75.79 a.253.1.1 123796 2nooA 502 76.82 1dlyA 164 78.31 a.1.1.1 14983 2fcwA 109 80.31 a.13.1.1 133288 1qqcA 773 80.92 c.55.3.5,e.8.1.1 33724,43013 2gfnA 209 81.34 a.4.1.9,a.121.1.1 135101,135102 1zcjA 463 81.93 1e4iA 447 84.34 c.1.8.4 59225 1i4nA 251 86.80 c.1.2.4 71114 1dl5A 317 87.83 c.66.1.7,d.197.1.1 64720,64721 1svsA 353 87.85 c.37.1.8 106051 1i9gA 280 89.75 c.66.1.13 62090