# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hr6B	443	3.76e-50	d.185.1.1,d.185.1.1	61166,61167
1qcrA	446	1.47e-48	d.185.1.1,d.185.1.1	59025,59026
1hr6A	475	2.84e-48	d.185.1.1,d.185.1.1	61164,61165
1ppjB	439	1.28e-47	d.185.1.1,d.185.1.1	104254,104255
3cx5A	431	2.62e-47		
1ppjA	446	4.20e-47	d.185.1.1,d.185.1.1	104252,104253
1kb9A	431	1.19e-45	d.185.1.1,d.185.1.1	77311,77312
1ezvA	430	1.50e-45	d.185.1.1,d.185.1.1	59541,59542
1q2lA	939	5.75e-42	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
2g47A	990	1.98e-39		
3cx5B	352	3.20e-39		
1kb9B	352	7.46e-38	d.185.1.1,d.185.1.1	77313,77314
1ezvB	352	2.72e-35	d.185.1.1,d.185.1.1	59543,59544
2fgeA	995	7.77e-34	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	133430,133431,133432,133433
1j96A	323	4.708	c.1.7.1	71616
1qqcA	773	6.117	c.55.3.5,e.8.1.1	33724,43013
1zuaX	317	14.16		
1qupA	222	19.03	b.1.8.1,d.58.17.1	22301,39352
1dpeA	507	19.74	c.94.1.1	35799
1f0yA	302	21.53	a.100.1.3,c.2.1.6	18793,30197
2dpoA	319	21.90		
1zzkA	82	23.05	d.51.1.1	125909
1tq4A	413	23.93	c.37.1.8	107201
1i9gA	280	25.11	c.66.1.13	62090
2qcoA	210	26.08		
2hdhA	293	30.90	a.100.1.3,c.2.1.6	18795,30199
1fe0A	68	31.38	d.58.17.1	39345
3buvA	326	33.25		
1zcbA	362	34.53	a.66.1.1,c.37.1.8	124901,124902
1s69A	124	42.43	a.1.1.1	105305
1svsA	353	43.30	c.37.1.8	106051
1zcaA	359	43.58	a.66.1.1,c.37.1.8	124897,124898
2yviA	111	43.78		
2nooA	502	45.46		
1bifA	469	46.03	c.37.1.7,c.60.1.4	31961,34003
1j5kA	89	46.87	d.51.1.1	71565
1xi9A	406	46.94	c.67.1.1	115355
2qrwA	128	47.67		
1g8yA	279	51.03	c.37.1.11	32302
1gdeA	389	52.11	c.67.1.1	60456
1c7nA	399	55.62	c.67.1.3	34413
2o7iA	592	57.52		
2gfnA	209	61.36	a.4.1.9,a.121.1.1	135101,135102
1us0A	316	63.64	c.1.7.1	99850
1g5tA	196	66.36	c.37.1.11	32366
2pbfA	227	66.66		
1tyhA	248	67.17	a.132.1.3	107458
1c20A	128	68.03	a.4.3.1	16079
1zlqA	502	68.68	c.94.1.1	125253
1v96A	149	78.63	c.120.1.1	119877
1i5kC	30	80.45		
1s1pA	331	85.38	c.1.7.1	98350
1xknA	355	85.95	d.126.1.6	115414