# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 8.73e-42 d.185.1.1,d.185.1.1 61166,61167 1hr6A 475 3.05e-40 d.185.1.1,d.185.1.1 61164,61165 1qcrA 446 6.07e-40 d.185.1.1,d.185.1.1 59025,59026 1ppjB 439 1.25e-39 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 2.03e-39 1ppjA 446 2.10e-39 d.185.1.1,d.185.1.1 104252,104253 1kb9A 431 3.60e-38 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 5.16e-38 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 3.34e-35 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 1.73e-33 3cx5B 352 1.90e-32 1kb9B 352 2.02e-31 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 2.85e-29 d.185.1.1,d.185.1.1 59543,59544 2fgeA 995 9.81e-29 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1f0yA 302 11.91 a.100.1.3,c.2.1.6 18793,30197 1c7nA 399 12.40 c.67.1.3 34413 2qcoA 210 17.14 2dpoA 319 17.41 1qupA 222 20.64 b.1.8.1,d.58.17.1 22301,39352 1fe0A 68 22.40 d.58.17.1 39345 1zzkA 82 22.83 d.51.1.1 125909 1dpeA 507 22.86 c.94.1.1 35799 1svsA 353 25.07 c.37.1.8 106051 1zcbA 362 26.75 a.66.1.1,c.37.1.8 124901,124902 1xi9A 406 29.22 c.67.1.1 115355 2hdhA 293 31.50 a.100.1.3,c.2.1.6 18795,30199 1gdeA 389 31.57 c.67.1.1 60456 1zcaA 359 38.40 a.66.1.1,c.37.1.8 124897,124898 2yviA 111 40.45 1j5kA 89 45.39 d.51.1.1 71565 1pvdA 537 45.51 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1tq4A 413 49.02 c.37.1.8 107201 1tadA 324 50.18 a.66.1.1,c.37.1.8 18194,32077 1i5kC 30 57.24 2o7iA 592 59.86 1w7lA 422 60.04 c.67.1.1 109226 1zlqA 502 60.16 c.94.1.1 125253 2im5A 394 61.30 1vlpA 441 61.73 d.41.2.2,c.1.17.2 108840,108841 1v96A 149 61.81 c.120.1.1 119877 1s69A 124 61.91 a.1.1.1 105305 1qqcA 773 62.71 c.55.3.5,e.8.1.1 33724,43013 2qrwA 128 64.85 2gfnA 209 65.46 a.4.1.9,a.121.1.1 135101,135102 1j96A 323 65.64 c.1.7.1 71616 1ciy 590 66.19 1cc8A 73 69.23 d.58.17.1 39343 3bptA 363 72.89 2ftuA 118 74.38 a.13.1.1 134082 1ciyA 590 76.24 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 2nooA 502 77.13 1c20A 128 78.57 a.4.3.1 16079 1ic1A 190 81.29 b.1.1.3,b.1.1.4 21654,21690 1yozA 116 82.28 a.253.1.1 123796 2z20A 432 82.46 1tyhA 248 84.41 a.132.1.3 107458 2oplA 187 84.83 1e8cA 498 85.95 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1x4pA 66 87.79