# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hr6B	443	2.47e-37	d.185.1.1,d.185.1.1	61166,61167
1qcrA	446	6.14e-36	d.185.1.1,d.185.1.1	59025,59026
1ppjB	439	1.56e-35	d.185.1.1,d.185.1.1	104254,104255
1hr6A	475	2.17e-35	d.185.1.1,d.185.1.1	61164,61165
1ppjA	446	6.22e-35	d.185.1.1,d.185.1.1	104252,104253
3cx5A	431	1.21e-34		
1kb9A	431	6.94e-34	d.185.1.1,d.185.1.1	77311,77312
1ezvA	430	7.68e-34	d.185.1.1,d.185.1.1	59541,59542
1q2lA	939	2.66e-30	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
2g47A	990	1.75e-28		
3cx5B	352	1.43e-27		
1kb9B	352	9.43e-27	d.185.1.1,d.185.1.1	77313,77314
2fgeA	995	8.89e-25	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	133430,133431,133432,133433
1ezvB	352	1.14e-24	d.185.1.1,d.185.1.1	59543,59544
2z20A	432	3.191		
1gdeA	389	6.040	c.67.1.1	60456
1vbjA	281	9.379		
1f0yA	302	10.04	a.100.1.3,c.2.1.6	18793,30197
1zuaX	317	10.87		
1qqcA	773	11.59	c.55.3.5,e.8.1.1	33724,43013
1xi9A	406	11.87	c.67.1.1	115355
1j96A	323	16.39	c.1.7.1	71616
2hdhA	293	16.42	a.100.1.3,c.2.1.6	18795,30199
2g2cA	167	18.98	c.57.1.1	134535
1w7lA	422	19.75	c.67.1.1	109226
2dpoA	319	20.73		
1poxA	585	21.13	c.31.1.3,c.36.1.5,c.36.1.9	31731,31793,31794
1zcjA	463	28.17		
1us0A	316	29.43	c.1.7.1	99850
1s69A	124	29.49	a.1.1.1	105305
2gb3A	409	30.39	c.67.1.1	134903
1c7nA	399	30.81	c.67.1.3	34413
3buvA	326	31.56		
2yviA	111	33.83		
1yozA	116	35.73	a.253.1.1	123796
2dr1A	386	47.15		
1g5tA	196	53.74	c.37.1.11	32366
2qrwA	128	55.67		
1dlyA	164	56.41	a.1.1.1	14983
1nf2A	268	56.97	c.108.1.10	91849
1zgdA	312	57.57		
2agtA	319	62.55		
1u08A	386	63.12	c.67.1.1	107543
1yizA	429	63.26	c.67.1.1	123375
2ao0A	324	64.02		
1p57B	255	65.04	b.47.1.2	94126
1zzkA	82	65.30	d.51.1.1	125909
2bgsA	344	66.05		
1ads	315	66.38		
1ccwB	483	67.93	c.1.19.2	29646
1bebA	162	69.11	b.60.1.1	27115
1dpeA	507	74.98	c.94.1.1	35799
2fcwA	109	75.79	a.13.1.1	133288
2hoxA	427	79.93	c.67.1.1	136644
1rdfA	267	83.95	c.108.1.3	104884
1yb4A	295	84.26