# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 9.74e-39 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 1.21e-37 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 1.92e-37 d.185.1.1,d.185.1.1 104254,104255 1hr6A 475 1.72e-36 d.185.1.1,d.185.1.1 61164,61165 1ezvA 430 9.97e-34 d.185.1.1,d.185.1.1 59541,59542 1kb9A 431 4.90e-33 d.185.1.1,d.185.1.1 77311,77312 3cx5A 431 2.08e-32 1qcrA 446 9.08e-30 d.185.1.1,d.185.1.1 59025,59026 1q2lA 939 3.91e-22 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 1.34e-21 3cx5B 352 3.25e-18 2fgeA 995 7.18e-18 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 1.60e-16 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 5.71e-15 d.185.1.1,d.185.1.1 59543,59544 2p4fA 299 3.220 2p8bA 369 7.022 1j96A 323 10.82 c.1.7.1 71616 1d3uB 201 11.99 a.74.1.2,a.74.1.2 18386,18387 2pgwA 384 12.45 2r7jA 317 17.78 1m9nA 613 18.68 c.24.1.3,c.97.1.4 78870,78871 1g8mA 593 19.47 c.24.1.3,c.97.1.4 60371,60372 1n4qB 377 19.51 a.102.4.3 91636 1a0p 290 19.53 3bk2A 562 22.14 1tkkA 366 22.78 c.1.11.2,d.54.1.1 107089,107090 2pulA 397 25.35 1dj0A 264 25.38 d.265.1.1 90337 2zadA 345 25.60 2hejA 323 28.90 1b89A 449 29.75 a.118.1.3 19138 1zuaX 317 31.20 2qg7A 458 31.38 1aop 497 31.44 3cyjA 372 32.27 1dceB 331 33.44 a.102.4.3 18872 3buvA 326 34.12 3borA 237 35.55 1rdfA 267 36.79 c.108.1.3 104884 1v5xA 203 37.55 c.1.2.4 100377 1vecA 206 37.84 c.37.1.19 100575 1c9bA 207 39.69 a.74.1.2,a.74.1.2 18372,18373 2es4D 332 39.71 2jhnA 295 41.23 2bgsA 344 41.46 1vz6A 393 41.67 d.154.1.2 108949 1hv8A 367 41.89 c.37.1.19,c.37.1.19 32405,32406 1kaeA 434 42.21 c.82.1.2 72247 1aopA 497 43.56 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1aisB 200 44.18 a.74.1.2,a.74.1.2 18384,18385 1hw6A 278 44.62 c.1.7.1 61296 1psdA 409 45.39 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1volA 204 46.34 a.74.1.2,a.74.1.2 18370,18371 2h78A 302 46.60 2gekA 406 47.11 1nu5A 370 47.79 c.1.11.2,d.54.1.1 92183,92184 2is6A 680 48.27 1zjaA 557 48.82 1vcvA 226 48.85 c.1.10.1 119988 2ovlA 371 48.91 2bg5A 324 49.09 1s1pA 331 50.25 c.1.7.1 98350 1kidA 203 51.09 c.8.5.1 30771 1rvkA 382 51.64 c.1.11.2,d.54.1.1 97928,97929 2grmA 317 52.02 3b9qA 302 55.03 1us0A 316 55.15 c.1.7.1 99850 1fhvA 323 58.01 c.1.11.2,d.54.1.1 29235,38879 1xkyA 301 59.22 c.1.10.1 122094 1frb 315 60.33 2gdqA 382 61.00 c.1.11.2,d.54.1.1 135020,135021 1zgdA 312 62.10 1tw0A 157 62.78 d.129.3.1 119364 1xbyA 216 63.79 c.1.2.3 121846 5tmpA 213 65.87 c.37.1.1 31931 1zj8A 566 66.10 1a53 247 67.15 2pozA 392 67.46 1fezA 256 67.60 c.108.1.3 43343 1l9vA 317 67.81 d.13.2.1,d.216.1.1 73760,73761 1uw4B 248 68.97 a.118.1.14 100072 1mi3A 322 69.28 c.1.7.1 91274 1pii 452 69.74 1jmoA 480 70.24 e.1.1.1 77138 2oz8A 389 70.84 2d0bA 310 71.05 1qvaA 223 71.18 c.37.1.19 32411 1euaA 213 72.48 c.1.10.1 29155 1j09A 468 74.39 a.97.1.1,c.26.1.1 77025,77026 1qamA 244 75.61 c.66.1.24 34220 1hi0P 664 77.32 e.8.1.6 61051 2ckfB 174 77.63 2d1cA 496 78.32 1ybeA 449 78.41 c.1.17.2,d.41.2.2 116605,116606 1jffB 445 78.59 c.32.1.1,d.79.2.1 62934,62935 1gc0A 398 78.81 c.67.1.3 70168 1pjqA 457 79.10 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2ajtA 500 80.79 b.43.2.2,c.85.1.2 126894,126895 2r91A 286 81.00 1nal1 297 81.35 1io2A 213 81.84 c.55.3.1 62612 2gxqA 207 82.72 1j77A 209 82.84 a.132.1.2 62674 1jilA 420 82.92 c.26.1.1 66745 1mpgA 282 83.21 a.96.1.3,d.129.1.2 18747,41296 1dquA 538 83.35 c.1.12.7 29314 2pgcA 207 83.79 1kw3B 292 87.65 d.32.1.3,d.32.1.3 77549,77550 1qlpA 394 87.68 e.1.1.1 42628 2qezA 455 88.10 1a0pA 290 89.07 a.60.9.1,d.163.1.1 18105,42165 3bsoA 510 89.25 1zczA 464 89.61 c.24.1.3,c.97.1.4 124923,124924