# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 6.17e-71 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 9.92e-71 d.185.1.1,d.185.1.1 104252,104253 1hr6A 475 1.16e-67 d.185.1.1,d.185.1.1 61164,61165 1ppjB 439 2.99e-67 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 1.39e-64 1kb9A 431 2.90e-63 d.185.1.1,d.185.1.1 77311,77312 1q2lA 939 1.50e-62 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 7.06e-62 2fgeA 995 5.25e-60 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 4.42e-49 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 5.62e-38 1fchA 368 0.5827 a.118.8.1 19212 2okjA 504 0.6122 2dplA 308 0.8070 2i7qA 402 1.076 1s95A 333 1.624 d.159.1.3 105375 1wyuA 438 3.177 c.67.1.7 121452 2hcfA 234 4.590 c.108.1.6 136333 2ppqA 322 4.734 2awiA 317 5.131 a.35.1.11,a.118.8.4 127435,127436 2ho1A 252 6.088 1zejA 293 6.738 2uy1A 493 7.473 2qmaA 497 8.396 1fxlA 167 8.519 d.58.7.1,d.58.7.1 39183,39184 2r44A 331 10.29 2pujA 286 10.37 2pkeA 251 10.51 1k3eA 156 10.73 d.198.1.1 68103 1u69A 163 10.88 d.32.1.7 107699 2hi0A 240 10.97 2ig7A 401 11.41 1us0A 316 12.93 c.1.7.1 99850 3b5oA 244 13.36 2etxA 209 15.77 2dgmA 466 16.02 c.67.1.6 131508 2hp0A 466 16.13 2hszA 243 16.20 c.108.1.6 136726 2anrA 178 16.26 1jk7A 323 16.60 d.159.1.3 63144 1ya0A 497 17.09 a.118.8.1 122785 3broA 141 17.39 1wovA 250 17.85 a.132.1.1 121124 1xi9A 406 17.95 c.67.1.1 115355 2v82A 212 19.33 1vjeA 166 19.61 d.185.1.2 100807 1pmmA 466 20.22 c.67.1.6 94901 2fbhA 146 20.50 a.4.5.28 133245 2dgkA 452 20.50 3c5iA 369 20.87 1zrnA 232 21.28 c.108.1.1 43323 1foeA 377 22.37 a.87.1.1,b.55.1.1 18517,26969 2eu8A 216 23.71 4tmkA 213 25.15 c.37.1.1 31930 2q4eA 362 25.65 2dtjA 178 26.69 2gnxA 365 29.85 1n97A 389 30.16 a.104.1.1 80335 1p3wA 404 30.70 c.67.1.3 87752 2fyfA 398 30.82 2hr3A 147 31.51 a.4.5.28 136678 1z3xA 238 32.01 a.118.1.22,a.261.1.1 124416,124417 1j98A 157 32.98 d.185.1.2 62755 2fdrA 229 33.67 c.108.1.6 133319 2bptA 861 33.92 a.118.1.1 128951 3bpvA 138 34.70 1h1yA 228 35.79 c.1.2.2 76506 1dceA 567 36.79 a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 1jv1A 505 37.43 c.68.1.5 71892 1qsaA 618 38.87 a.118.5.1,d.2.1.6 19182,36988 1d2fA 390 39.23 c.67.1.3 34411 1jyoA 130 39.96 d.198.1.1 67483 2rjoA 332 41.46 1j6wA 175 42.65 d.185.1.2 62663 2z0qA 346 43.02 1nw1A 429 43.40 d.144.1.8 86286 1yjsA 419 43.71 c.67.1.4 123461 2d1eA 248 43.73 3caiA 406 45.27 2i06A 309 45.28 1vjoA 393 46.50 c.67.1.3 100827 2grmA 317 47.63 1in4A 334 47.71 a.4.5.11,c.37.1.20 62597,62598 3bhpA 60 47.74 1c4kA 730 48.70 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 2p4fA 299 49.05 1tyhA 248 49.88 a.132.1.3 107458 1l0bA 229 50.16 c.15.1.3,c.15.1.3 73391,73392 2v6gA 364 50.20 2p2sA 336 50.22 2rdpA 150 51.16 1fadA 99 52.21 a.77.1.2 18428 1ntyA 311 52.22 a.87.1.1,b.55.1.1 103873,103874 1hlvA 131 52.39 a.4.1.7,a.4.1.7 65854,65855 1rcwA 231 54.07 a.132.1.4 97299 2ethA 154 54.74 a.4.5.28 132358 1xngA 268 55.68 c.26.2.1 122186 2glxA 332 56.69 2fa5A 162 57.54 1nrjB 218 58.01 c.37.1.8 86125 1yviA 149 58.88 a.24.10.2 124099 1qz9A 416 59.22 c.67.1.3 96621 2no4A 240 60.28 2e18A 257 61.04 3buvA 326 62.16 1aisB 200 63.63 a.74.1.2,a.74.1.2 18384,18385 1ew6A 137 63.64 a.1.1.2 15637 2fbiA 142 64.00 a.4.5.28 133246 1xzoA 174 64.05 c.47.1.10 122474 1bykA 255 64.64 c.93.1.1 35706 2qfjA 216 65.41 1kl1A 419 65.88 c.67.1.4 72663 2hufA 393 66.16 2e7jA 371 66.71 1c7nA 399 66.92 c.67.1.3 34413 1lnwA 147 67.00 a.4.5.28 78104 3bddA 142 68.12 1n45A 233 69.53 a.132.1.1 79981 1txdA 385 70.55 a.87.1.1,b.55.1.1 107422,107423 2i88A 191 70.75 1ub0A 258 71.32 c.72.1.2 88394 3cs3A 277 72.07 3bcxA 437 72.36 2chgA 226 73.18 2q40A 367 73.28 e.50.1.1 139814 1t15A 214 73.33 c.15.1.3,c.15.1.3 99067,99068 2jisA 515 74.18 1rtwA 220 74.29 a.132.1.3 97823 2gxgA 146 74.55 1yqgA 263 75.82 3bgvA 313 76.95 1js3A 486 77.43 c.67.1.6 67215 3bjaA 139 77.71 2hmaA 376 78.27 2ah5A 210 79.02 c.108.1.6 126742 3csuA 310 80.17 c.78.1.1,c.78.1.1 35094,35095 3bj6A 152 80.92 2qcxA 263 82.49 1w3iA 293 83.61 c.1.10.1 109152 1lj9A 144 83.70 a.4.5.28 78035 2ho3A 325 84.33 2fp1A 166 85.00 a.130.1.4 133891 1t3iA 420 85.57 c.67.1.3 106354 2nnnA 140 85.88 2nyxA 168 86.36 3ceaA 346 88.38 1f07A 321 88.52 c.1.16.3 59560 1twyA 290 89.13 c.94.1.1 112767 2bv6A 142 89.14 1xfrA 128 89.17 2ondA 308 89.36