# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 1.01e-88 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 4.50e-88 d.185.1.1,d.185.1.1 104252,104253 1hr6A 475 5.43e-84 d.185.1.1,d.185.1.1 61164,61165 1ppjB 439 1.25e-83 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 8.69e-80 1kb9A 431 2.15e-77 d.185.1.1,d.185.1.1 77311,77312 2g47A 990 2.58e-77 1q2lA 939 3.35e-77 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 1.36e-74 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 7.79e-60 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 5.99e-46 2i7qA 402 0.09305 2dplA 308 0.1994 2okjA 504 0.3579 1fchA 368 0.7360 a.118.8.1 19212 2ho1A 252 1.444 1wyuA 438 1.721 c.67.1.7 121452 1s95A 333 2.417 d.159.1.3 105375 3b5oA 244 2.508 1fxlA 167 3.492 d.58.7.1,d.58.7.1 39183,39184 2pujA 286 3.629 2hszA 243 3.641 c.108.1.6 136726 2hp0A 466 3.875 1rcwA 231 4.493 a.132.1.4 97299 2qmaA 497 5.133 2awiA 317 5.962 a.35.1.11,a.118.8.4 127435,127436 1zejA 293 6.303 2r44A 331 6.441 1pmmA 466 6.715 c.67.1.6 94901 1h1yA 228 6.821 c.1.2.2 76506 1wovA 250 6.900 a.132.1.1 121124 2anrA 178 7.367 1xi9A 406 7.691 c.67.1.1 115355 2ppqA 322 7.939 1p3wA 404 8.553 c.67.1.3 87752 2ig7A 401 8.553 2hi0A 240 10.11 2hcfA 234 10.15 c.108.1.6 136333 2fyfA 398 11.67 2dgmA 466 11.79 c.67.1.6 131508 2pkeA 251 11.84 2q4eA 362 12.42 1u69A 163 12.72 d.32.1.7 107699 2uy1A 493 12.76 2etxA 209 12.88 2dtjA 178 13.22 2d2rA 245 13.26 2hufA 393 14.19 1ew6A 137 14.23 a.1.1.2 15637 1in4A 334 14.87 a.4.5.11,c.37.1.20 62597,62598 2dgkA 452 16.32 1vjoA 393 16.97 c.67.1.3 100827 1l0bA 229 17.25 c.15.1.3,c.15.1.3 73391,73392 2ondA 308 18.25 3caiA 406 18.57 1hlvA 131 19.80 a.4.1.7,a.4.1.7 65854,65855 1rtwA 220 19.99 a.132.1.3 97823 1jv1A 505 22.48 c.68.1.5 71892 1js3A 486 23.15 c.67.1.6 67215 1z3xA 238 23.21 a.118.1.22,a.261.1.1 124416,124417 3broA 141 23.38 2z0qA 346 23.90 2bbrA 195 23.99 1xngA 268 24.73 c.26.2.1 122186 2glxA 332 26.01 1yjsA 419 26.34 c.67.1.4 123461 2e2eA 177 27.09 1tyhA 248 28.15 a.132.1.3 107458 1us0A 316 28.79 c.1.7.1 99850 2p4fA 299 29.82 2chgA 226 30.46 2czlA 272 31.28 c.94.1.1 131055 3bkxA 275 31.58 1foeA 377 31.88 a.87.1.1,b.55.1.1 18517,26969 2ah5A 210 32.75 c.108.1.6 126742 1xnfA 275 34.47 a.118.8.1 115580 1auiB 169 34.49 a.39.1.5 17325 1fadA 99 35.67 a.77.1.2 18428 1dqeA 137 36.10 a.39.2.1 17388 1yakA 263 36.28 a.132.1.3 122833 2bwjA 199 37.10 1ko6A 187 37.26 b.119.1.1 77471 2qcxA 263 37.67 2z9wA 392 37.80 1k3eA 156 38.54 d.198.1.1 68103 2p2sA 336 38.82 3buvA 326 39.47 2j6gA 266 39.85 2e18A 257 39.93 1kl1A 419 40.73 c.67.1.4 72663 1j1iA 296 41.46 c.69.1.10 83977 2v6gA 364 41.57 2rjoA 332 41.99 2i88A 191 42.06 3ceaA 346 42.21 1uhnA 189 44.57 a.39.1.5 99399 2jg0A 535 44.70 2qm8A 337 44.96 2eu8A 216 47.79 1zrnA 232 47.83 c.108.1.1 43323 1td6A 306 47.86 a.234.1.1 112390 1wdcC 156 47.91 a.39.1.5 17317 2fdrA 229 48.01 c.108.1.6 133319 1vp4A 425 48.11 c.67.1.1 113935 1bykA 255 52.00 c.93.1.1 35706 1d2fA 390 52.26 c.67.1.3 34411 1uhkA 191 52.27 a.39.1.5 119681 1xfiA 367 52.29 e.50.1.1 109584 2fbhA 146 52.49 a.4.5.28 133245 3c5iA 369 52.91 2gnxA 365 53.65 1qz9A 416 54.04 c.67.1.3 96621 3bjhA 119 54.31 2ghpA 292 54.36 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 3bpvA 138 54.54 3b9qA 302 56.20 2ovkC 159 56.58 1s1eA 224 56.72 a.39.1.5 112007 1t15A 214 57.16 c.15.1.3,c.15.1.3 99067,99068 3c1aA 315 57.35 2i6uA 307 58.83 2r2iA 198 60.43 2grmA 317 60.96 2rdpA 150 61.94 1ek6A 348 62.33 c.2.1.2 29800 1jdhA 529 62.81 a.118.1.1 66549 2hr3A 147 63.02 a.4.5.28 136678 1m7yA 435 63.05 c.67.1.4 78761 1r5rA 119 63.58 a.39.2.1 97104 1elwA 118 63.59 a.118.8.1 19207 2v82A 212 64.45 1n45A 233 65.34 a.132.1.1 79981 1c7nA 399 65.49 c.67.1.3 34413 4tmkA 213 67.15 c.37.1.1 31930 2ho3A 325 67.41 2debA 653 68.08 1ppjD 241 68.09 a.3.1.3,f.23.11.1 104258,104259 2rhwA 283 68.09 1nd4A 264 68.70 d.144.1.6 91815 3boqA 160 69.00 1jkeA 145 69.26 c.110.1.1 66791 2nogA 173 71.60 2qacA 146 71.86 2dr1A 386 72.34 1rrvA 416 72.58 c.87.1.5 105083 1yviA 149 72.61 a.24.10.2 124099 2dtvA 397 73.04 1u3dA 509 73.80 a.99.1.1,c.28.1.1 107638,107639 1ntyA 311 73.94 a.87.1.1,b.55.1.1 103873,103874 1tqhA 247 74.36 c.69.1.29 107225 2dkjA 407 74.61 1tltA 319 75.83 c.2.1.3,d.81.1.5 107135,107136 1aisB 200 76.61 a.74.1.2,a.74.1.2 18384,18385 2fbiA 142 76.75 a.4.5.28 133246 2hmaA 376 76.76 2h61A 92 76.96 a.39.1.2 136169 3bjdA 332 77.29 1w3iA 293 77.38 c.1.10.1 109152 1wgzA 510 77.49 3bhpA 60 78.08 1a0p 290 79.12 3c4bA 265 80.30 1zh8A 340 80.46 c.2.1.3,d.81.1.5 125077,125078 2ou3A 161 80.78 1t3iA 420 81.20 c.67.1.3 106354 2zfdA 226 81.75 2bwnA 401 81.85 c.67.1.4 129368 1jyoA 130 82.23 d.198.1.1 67483 1s3cA 141 82.40 1txdA 385 82.84 a.87.1.1,b.55.1.1 107422,107423 1musA 477 84.03 c.55.3.4 79494 2pbyA 308 84.27 1nrjB 218 84.80 c.37.1.8 86125 3bhwA 209 84.99 1ymkA 175 85.37 c.46.1.1 123699 2ifuA 307 86.58 1yqgA 263 86.58 3c2bA 221 86.87 1iugA 352 87.08 c.67.1.3 90699 1vjeA 166 87.27 d.185.1.2 100807 1na3A 91 88.49 k.38.1.1 85481 1jtvA 327 89.22 c.2.1.2 84230 2hejA 323 89.94