# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 3.66e-90 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 1.53e-89 d.185.1.1,d.185.1.1 104252,104253 1hr6A 475 1.58e-85 d.185.1.1,d.185.1.1 61164,61165 1ppjB 439 4.84e-85 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 3.13e-81 1kb9A 431 6.56e-79 d.185.1.1,d.185.1.1 77311,77312 2g47A 990 2.41e-78 1q2lA 939 4.20e-78 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 1.46e-75 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 8.95e-61 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 2.32e-46 2i7qA 402 0.07549 2okjA 504 0.2581 2dplA 308 0.2623 1fchA 368 0.8849 a.118.8.1 19212 1wyuA 438 1.658 c.67.1.7 121452 2qmaA 497 3.021 1s95A 333 3.135 d.159.1.3 105375 2ho1A 252 3.558 1zejA 293 3.771 2pujA 286 4.169 3b5oA 244 4.195 2awiA 317 4.726 a.35.1.11,a.118.8.4 127435,127436 1fxlA 167 4.760 d.58.7.1,d.58.7.1 39183,39184 2hi0A 240 5.206 2hszA 243 5.399 c.108.1.6 136726 2hp0A 466 5.641 2ppqA 322 5.699 2r44A 331 6.038 1u69A 163 6.135 d.32.1.7 107699 2hcfA 234 6.575 c.108.1.6 136333 1pmmA 466 6.943 c.67.1.6 94901 1wovA 250 7.386 a.132.1.1 121124 1p3wA 404 7.407 c.67.1.3 87752 2pkeA 251 8.516 2ig7A 401 9.251 1us0A 316 9.433 c.1.7.1 99850 2anrA 178 9.553 1rcwA 231 10.00 a.132.1.4 97299 2q4eA 362 10.70 1xi9A 406 10.97 c.67.1.1 115355 2fyfA 398 11.18 1h1yA 228 11.33 c.1.2.2 76506 2dgmA 466 11.81 c.67.1.6 131508 3caiA 406 12.42 2dtjA 178 13.10 2uy1A 493 13.27 2dgkA 452 14.07 2etxA 209 14.76 2hufA 393 14.97 1in4A 334 17.42 a.4.5.11,c.37.1.20 62597,62598 2z0qA 346 17.60 1ew6A 137 20.29 a.1.1.2 15637 1hlvA 131 20.59 a.4.1.7,a.4.1.7 65854,65855 2d2rA 245 21.92 3broA 141 22.61 2ondA 308 22.67 1yjsA 419 23.42 c.67.1.4 123461 1rtwA 220 24.07 a.132.1.3 97823 1xngA 268 25.06 c.26.2.1 122186 1vjoA 393 25.48 c.67.1.3 100827 1fadA 99 25.66 a.77.1.2 18428 1foeA 377 27.05 a.87.1.1,b.55.1.1 18517,26969 2glxA 332 27.24 2gnxA 365 27.29 2bbrA 195 27.33 2ah5A 210 28.66 c.108.1.6 126742 1jv1A 505 28.96 c.68.1.5 71892 1l0bA 229 29.69 c.15.1.3,c.15.1.3 73391,73392 1js3A 486 31.16 c.67.1.6 67215 2z9wA 392 31.34 1k3eA 156 31.55 d.198.1.1 68103 2chgA 226 32.18 2p4fA 299 32.40 1kl1A 419 33.76 c.67.1.4 72663 1tyhA 248 34.56 a.132.1.3 107458 2v6gA 364 34.60 2p2sA 336 35.30 3bkxA 275 35.86 3ceaA 346 36.01 1nrjB 218 37.52 c.37.1.8 86125 2eu8A 216 38.13 1z3xA 238 38.29 a.118.1.22,a.261.1.1 124416,124417 2e2eA 177 40.60 2v82A 212 41.00 2d1eA 248 41.14 1auiB 169 41.69 a.39.1.5 17325 3bpvA 138 42.70 2czlA 272 44.45 c.94.1.1 131055 1yakA 263 44.56 a.132.1.3 122833 1bykA 255 44.67 c.93.1.1 35706 2qcxA 263 44.71 2j6gA 266 45.23 1dqeA 137 45.42 a.39.2.1 17388 2e18A 257 46.22 1w3iA 293 46.65 c.1.10.1 109152 1uhnA 189 46.83 a.39.1.5 99399 1zrnA 232 47.38 c.108.1.1 43323 2rdpA 150 47.51 2ho3A 325 47.79 2hr3A 147 48.67 a.4.5.28 136678 2hejA 323 49.17 3boqA 160 49.27 3buvA 326 49.38 1u3dA 509 50.95 a.99.1.1,c.28.1.1 107638,107639 2fbhA 146 51.16 a.4.5.28 133245 1wdcC 156 51.28 a.39.1.5 17317 1ppjD 241 51.65 a.3.1.3,f.23.11.1 104258,104259 2jg0A 535 52.24 1d2fA 390 52.86 c.67.1.3 34411 1n45A 233 53.56 a.132.1.1 79981 1xfiA 367 53.69 e.50.1.1 109584 1txdA 385 54.33 a.87.1.1,b.55.1.1 107422,107423 2rjoA 332 55.14 3c1aA 315 55.46 1xnfA 275 56.25 a.118.8.1 115580 4tmkA 213 57.09 c.37.1.1 31930 2qm8A 337 57.39 3b9qA 302 57.99 1vp4A 425 58.01 c.67.1.1 113935 2qacA 146 58.20 2r2iA 198 58.40 2bwjA 199 58.45 2i6uA 307 58.66 1ek6A 348 58.67 c.2.1.2 29800 1ko6A 187 59.26 b.119.1.1 77471 2ql3A 209 59.39 1nd4A 264 59.74 d.144.1.6 91815 2ovkC 159 60.11 1s1eA 224 60.63 a.39.1.5 112007 3bhwA 209 62.78 2ifuA 307 63.82 3cfyA 137 64.79 2hmaA 376 65.22 2dr1A 386 65.64 2jisA 515 65.81 1qz9A 416 66.31 c.67.1.3 96621 1jtvA 327 66.60 c.2.1.2 84230 3bjhA 119 66.89 1w5tA 412 67.19 a.4.5.11,c.37.1.20 114255,114256 1j98A 157 67.23 d.185.1.2 62755 3c5iA 369 67.39 2dkjA 407 68.03 1yqgA 263 69.11 2fdrA 229 69.67 c.108.1.6 133319 3c4bA 265 69.76 2grmA 317 70.80 1tqhA 247 70.86 c.69.1.29 107225 1vjeA 166 71.80 d.185.1.2 100807 1ntyA 311 72.16 a.87.1.1,b.55.1.1 103873,103874 1jdhA 529 72.34 a.118.1.1 66549 2ou3A 161 72.79 2pbyA 308 73.15 1nw1A 429 73.58 d.144.1.8 86286 1kmqA 184 75.26 c.37.1.8 84412 3bcxA 437 75.74 1wgzA 510 76.47 1xfrA 128 77.17 1tltA 319 77.61 c.2.1.3,d.81.1.5 107135,107136 1uhkA 191 78.51 a.39.1.5 119681 1t15A 214 78.69 c.15.1.3,c.15.1.3 99067,99068 2nogA 173 78.97 3c2bA 221 79.26 1lnwA 147 79.60 a.4.5.28 78104 2zfdA 226 80.09 2gv5A 161 81.65 2h61A 92 81.92 a.39.1.2 136169 2rhwA 283 82.30 1c7nA 399 82.32 c.67.1.3 34413 2yzvA 303 82.37 2fbiA 142 84.02 a.4.5.28 133246 1aisB 200 84.05 a.74.1.2,a.74.1.2 18384,18385 2i88A 191 84.61 2i06A 309 85.20 2g8yA 385 86.02 1jyoA 130 86.15 d.198.1.1 67483 1elwA 118 86.37 a.118.8.1 19207 1musA 477 86.74 c.55.3.4 79494 3bhpA 60 86.95 1ymkA 175 86.97 c.46.1.1 123699 2qrwA 128 88.44 1r5rA 119 89.40 a.39.2.1 97104 1zh8A 340 89.82 c.2.1.3,d.81.1.5 125077,125078