# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 4.47e-69 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 3.42e-68 d.185.1.1,d.185.1.1 104252,104253 1hr6A 475 3.57e-65 d.185.1.1,d.185.1.1 61164,61165 1ppjB 439 1.50e-64 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 2.09e-61 1kb9A 431 2.07e-60 d.185.1.1,d.185.1.1 77311,77312 1q2lA 939 4.34e-58 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 2.65e-56 2fgeA 995 6.24e-52 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 3.25e-47 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 2.68e-37 1mi3A 322 1.791 c.1.7.1 91274 1us0A 316 2.195 c.1.7.1 99850 1qwkA 317 3.857 c.1.7.1 96482 2i7qA 402 4.160 1yakA 263 4.647 a.132.1.3 122833 1tyhA 248 4.759 a.132.1.3 107458 2hejA 323 5.185 2hszA 243 5.702 c.108.1.6 136726 2ig7A 401 5.703 2v82A 212 5.930 1rtwA 220 6.285 a.132.1.3 97823 1s1pA 331 6.308 c.1.7.1 98350 1rcwA 231 7.475 a.132.1.4 97299 4tmkA 213 7.792 c.37.1.1 31930 3b5oA 244 8.172 1js3A 486 8.604 c.67.1.6 67215 1xi9A 406 9.009 c.67.1.1 115355 1n62C 288 9.124 d.87.2.1,d.145.1.3 80094,80095 1n45A 233 9.588 a.132.1.1 79981 1h1yA 228 10.17 c.1.2.2 76506 2rhsA 294 10.34 3buvA 326 11.04 1p3wA 404 11.62 c.67.1.3 87752 1s4bP 674 11.78 d.92.1.5 105252 2i06A 309 11.96 2dtjA 178 12.14 2qm8A 337 13.25 2qcxA 263 13.27 1wovA 250 13.82 a.132.1.1 121124 2hcfA 234 13.97 c.108.1.6 136333 1i3cA 149 14.59 c.23.1.1 71112 2awiA 317 14.94 a.35.1.11,a.118.8.4 127435,127436 1hw6A 278 15.51 c.1.7.1 61296 1vjeA 166 15.58 d.185.1.2 100807 1l5aA 436 16.59 c.43.1.2,c.43.1.2 75923,75924 2es4D 332 17.56 3bwdD 182 18.57 2q4eA 362 19.75 2etxA 209 20.45 3c5iA 369 20.55 2p4fA 299 20.67 1j96A 323 21.02 c.1.7.1 71616 1wyuA 438 22.72 c.67.1.7 121452 1iw0A 215 23.02 a.132.1.1 83720 1vbjA 281 23.09 2ao0A 324 23.73 1frb 315 24.53 2lhbA 149 24.66 a.1.1.2 15597 1zuaX 317 24.78 2r2iA 198 25.53 2glxA 332 25.94 2i88A 191 25.94 1zgdA 312 26.11 1lucB 324 26.18 c.1.16.1 29548 3crrA 323 26.35 1zybA 232 26.47 a.4.5.4,b.82.3.2 125815,125816 3bhwA 209 26.54 1j1iA 296 26.70 c.69.1.10 83977 1xvhA 129 26.95 a.8.1.2,a.8.1.2 116084,116085 1qv1A 195 28.31 a.39.1.5 96347 1wzdA 215 29.32 a.132.1.1 121493 1kmqA 184 29.41 c.37.1.8 84412 2nogA 173 30.07 1yioA 208 30.57 a.4.6.2,c.23.1.1 123326,123327 1fadA 99 31.09 a.77.1.2 18428 1f07A 321 31.46 c.1.16.3 59560 1bea 127 31.66 2yviA 111 31.81 2q3hA 201 32.77 1rd5A 262 33.44 c.1.2.4 111772 1jv1A 505 35.04 c.68.1.5 71892 2bfwA 200 35.37 c.87.1.8 128456 1g8iA 190 35.96 a.39.1.5 60363 2b3fA 400 36.78 1k66A 149 37.67 c.23.1.1 90941 2bbrA 195 38.09 2ppqA 322 39.76 1j6wA 175 40.06 d.185.1.2 62663 1u4qA 322 40.22 a.7.1.1,a.7.1.1,a.7.1.1 113024,113025,113026 1xbyA 216 40.65 c.1.2.3 121846 1d2fA 390 40.73 c.67.1.3 34411 2ho3A 325 41.22 1ny1A 240 41.86 c.6.2.3 86395 2v6gA 364 42.36 1u69A 163 42.77 d.32.1.7 107699 2ol2A 395 43.21 1xnfA 275 43.42 a.118.8.1 115580 1yviA 149 44.13 a.24.10.2 124099 1tqxA 227 45.33 c.1.2.2 112614 2z8aA 146 46.25 1ur3M 319 46.26 c.1.7.1 99806 1a04A 215 48.02 a.4.6.2,c.23.1.1 16234,31089 1fxlA 167 49.21 d.58.7.1,d.58.7.1 39183,39184 2ghpA 292 49.52 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 2pl1A 121 50.13 2grmA 317 50.34 2ccqA 99 50.74 d.314.1.1 130252 1m7bA 184 50.94 c.37.1.8 74572 2anrA 178 50.96 1s95A 333 52.08 d.159.1.3 105375 1rrmA 386 52.30 e.22.1.2 105081 1k3eA 156 52.84 d.198.1.1 68103 3bhpA 60 53.61 2o36A 674 54.07 2douA 376 54.57 3cnbA 143 54.70 3bjhA 119 54.84 1ff9A 450 56.41 c.2.1.3,d.81.1.2 30039,39954 2dr1A 386 56.59 1p2fA 220 56.60 a.4.6.1,c.23.1.1 87720,87721 2q6mA 212 57.16 2dxnA 274 57.95 2g6bA 180 58.81 c.37.1.8 134701 2sasA 185 58.88 a.39.1.5 17258 1c7nA 399 61.67 c.67.1.3 34413 3sdhA 146 63.02 a.1.1.2 14984 1t15A 214 64.04 c.15.1.3,c.15.1.3 99067,99068 1mh1 186 64.37 1s7iA 124 64.83 d.58.4.9 105353 1omrA 201 65.58 a.39.1.5 93349 1zh2A 121 66.34 c.23.1.1 125069 1hw1A 239 66.72 a.4.5.6,a.78.1.1 16111,18441 2fdrA 229 67.31 c.108.1.6 133319 1ls1A 295 67.31 a.24.13.1,c.37.1.10 78170,78171 1t3qC 288 67.96 d.87.2.1,d.145.1.3 106371,106372 2okjA 504 68.23 1lucA 355 68.81 c.1.16.1 29547 2nn4A 72 69.38 3bosA 242 72.25 1kl1A 419 72.55 c.67.1.4 72663 1pyfA 312 72.66 c.1.7.1 95334 1dlyA 164 73.93 a.1.1.1 14983 2pw4A 188 74.24 2scpA 174 74.27 a.39.1.5 17256 1vp4A 425 74.51 c.67.1.1 113935 1xzoA 174 75.21 c.47.1.10 122474 1jflA 228 76.15 c.78.2.1,c.78.2.1 71656,71657 1yxaA 398 76.19 1ofcX 304 76.54 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1q3eA 207 76.74 b.82.3.2 95669 1pz1A 333 76.75 c.1.7.1 95390 1v33A 366 78.57 d.264.1.1 100278 1z3xA 238 78.65 a.118.1.22,a.261.1.1 124416,124417 1zh8A 340 79.32 c.2.1.3,d.81.1.5 125077,125078 2dmeA 120 81.32 2dztA 248 81.60 1colA 204 83.00 f.1.1.1 43378 1c4kA 730 83.28 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 8abpA 306 83.64 c.93.1.1 35647 2q83A 346 84.37 2hufA 393 84.61 1y791 680 84.88 1txdA 385 86.25 a.87.1.1,b.55.1.1 107422,107423 2fyfA 398 86.54 1s3cA 141 86.70 2qv0A 143 86.96 1ek0A 170 87.83 c.37.1.8 32076 2r47A 157 88.07 1u8zA 168 88.09 c.37.1.8 113212 1eg5A 384 89.46 c.67.1.3 34429 2pkeA 251 89.48