# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 5.45e-72 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 6.95e-71 d.185.1.1,d.185.1.1 104252,104253 1hr6A 475 8.85e-69 d.185.1.1,d.185.1.1 61164,61165 1ppjB 439 1.19e-68 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 1.58e-65 1kb9A 431 1.96e-64 d.185.1.1,d.185.1.1 77311,77312 1q2lA 939 9.49e-64 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 2.52e-63 2fgeA 995 6.53e-62 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 6.01e-50 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 4.06e-38 2okjA 504 0.2720 2i7qA 402 0.5328 1us0A 316 1.578 c.1.7.1 99850 1fchA 368 1.580 a.118.8.1 19212 2ppqA 322 1.778 2awiA 317 1.978 a.35.1.11,a.118.8.4 127435,127436 2uy1A 493 2.078 1wyuA 438 3.035 c.67.1.7 121452 1s95A 333 4.882 d.159.1.3 105375 2q4eA 362 5.980 2hcfA 234 6.051 c.108.1.6 136333 1vjoA 393 6.809 c.67.1.3 100827 1fxlA 167 6.874 d.58.7.1,d.58.7.1 39183,39184 2fyfA 398 8.307 3b5oA 244 9.041 1d2fA 390 9.668 c.67.1.3 34411 2hufA 393 9.778 2dplA 308 9.914 1h1yA 228 10.23 c.1.2.2 76506 2ig7A 401 10.42 3c5iA 369 10.50 2hp0A 466 12.12 2r44A 331 13.35 1tyhA 248 13.61 a.132.1.3 107458 2d2rA 245 14.01 2qmaA 497 14.31 2ho1A 252 15.05 1u69A 163 15.29 d.32.1.7 107699 2dgmA 466 15.52 c.67.1.6 131508 2eu8A 216 16.16 1nw1A 429 18.01 d.144.1.8 86286 2i06A 309 18.70 2p4fA 299 19.22 1p3wA 404 20.52 c.67.1.3 87752 1musA 477 21.12 c.55.3.4 79494 1f07A 321 21.22 c.1.16.3 59560 2czlA 272 21.61 c.94.1.1 131055 1pmmA 466 21.62 c.67.1.6 94901 1qwkA 317 21.72 c.1.7.1 96482 1frb 315 21.98 1k3eA 156 22.91 d.198.1.1 68103 2etxA 209 23.56 2rhsA 294 23.59 1zgdA 312 24.19 2glxA 332 26.22 3buvA 326 26.55 1s1pA 331 27.30 c.1.7.1 98350 1xi9A 406 27.51 c.67.1.1 115355 1txdA 385 27.60 a.87.1.1,b.55.1.1 107422,107423 1yjsA 419 29.07 c.67.1.4 123461 2pkeA 251 29.36 1mi3A 322 30.22 c.1.7.1 91274 1jtvA 327 31.54 c.2.1.2 84230 3cghA 516 32.63 1z3xA 238 32.73 a.118.1.22,a.261.1.1 124416,124417 1ko6A 187 32.93 b.119.1.1 77471 2dgkA 452 32.93 1c4kA 730 33.09 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 2pftA 571 33.62 1hlvA 131 33.96 a.4.1.7,a.4.1.7 65854,65855 2anrA 178 34.17 1j96A 323 36.86 c.1.7.1 71616 1kl1A 419 37.21 c.67.1.4 72663 3bkxA 275 38.82 1wovA 250 39.67 a.132.1.1 121124 1qz9A 416 39.70 c.67.1.3 96621 1rcwA 231 41.55 a.132.1.4 97299 2ajrA 331 43.55 c.72.1.1 126892 2ri0A 234 45.73 2qfjA 216 46.74 1m7yA 435 47.43 c.67.1.4 78761 1ppjD 241 48.11 a.3.1.3,f.23.11.1 104258,104259 2bptA 861 48.38 a.118.1.1 128951 1wyuB 474 48.40 c.67.1.7 121453 1lk9A 448 48.93 c.67.1.1 78057 3bzbA 281 49.25 1ya0A 497 51.06 a.118.8.1 122785 1lhpA 312 51.08 c.72.1.5 77960 2v82A 212 52.63 3caiA 406 52.94 1zejA 293 53.89 1zuaX 317 57.04 4tmkA 213 57.14 c.37.1.1 31930 1foeA 377 57.70 a.87.1.1,b.55.1.1 18517,26969 1kxuA 333 57.71 a.74.1.1,a.74.1.1 18358,18359 2hmaA 376 59.48 2hejA 323 60.18 2bwnA 401 60.36 c.67.1.4 129368 2ao0A 324 60.38 2grmA 317 61.70 2iagA 482 61.72 1n97A 389 62.12 a.104.1.1 80335 3broA 141 62.86 2v6gA 364 67.07 1t3iA 420 68.56 c.67.1.3 106354 2q40A 367 68.88 e.50.1.1 139814 1ecrA 309 69.33 e.2.1.1 42678 1xfrA 128 70.12 1fadA 99 72.26 a.77.1.2 18428 3bcxA 437 72.33 1xnfA 275 72.48 a.118.8.1 115580 1nrlA 316 72.58 a.123.1.1 92091 1l0bA 229 73.17 c.15.1.3,c.15.1.3 73391,73392 2okcA 445 73.85 1dqeA 137 74.12 a.39.2.1 17388 1jk7A 323 74.83 d.159.1.3 63144 1yakA 263 75.00 a.132.1.3 122833 1pv1A 299 75.57 c.69.1.34 111639 2b5dX 528 76.35 a.8.3.3,c.6.2.4 127886,127887 1yqgA 263 77.72 1w36B 1180 78.01 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2ghpA 292 78.68 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 2rjoA 332 81.29 2e7jA 371 83.30 1gveA 327 84.52 c.1.7.1 70597 1zinA 217 84.66 c.37.1.1,g.41.2.1 31915,45178 1vp4A 425 85.96 c.67.1.1 113935 2dkjA 407 85.98 2og1A 286 86.06 2hi0A 240 86.71 2hszA 243 86.87 c.108.1.6 136726 3cs3A 277 87.72 2ho3A 325 88.55 2ak3A 226 88.77 c.37.1.1,g.41.2.1 31892,45193 1bykA 255 88.94 c.93.1.1 35706 1n62C 288 89.27 d.87.2.1,d.145.1.3 80094,80095