# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 2.90e-80 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 1.41e-79 d.185.1.1,d.185.1.1 104252,104253 1hr6A 475 7.20e-77 d.185.1.1,d.185.1.1 61164,61165 1ppjB 439 5.37e-76 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 1.18e-72 1kb9A 431 1.88e-71 d.185.1.1,d.185.1.1 77311,77312 1q2lA 939 3.09e-71 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 4.60e-71 2fgeA 995 2.16e-68 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 2.13e-55 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 1.79e-42 2i7qA 402 0.1530 2okjA 504 0.6216 2dplA 308 0.8840 2ppqA 322 1.737 1wyuA 438 1.984 c.67.1.7 121452 1fchA 368 2.521 a.118.8.1 19212 1s95A 333 2.604 d.159.1.3 105375 3b5oA 244 2.792 2r44A 331 3.232 2hcfA 234 4.032 c.108.1.6 136333 2uy1A 493 4.759 2awiA 317 5.051 a.35.1.11,a.118.8.4 127435,127436 3c5iA 369 7.381 1wovA 250 7.986 a.132.1.1 121124 2qmaA 497 8.054 1d2fA 390 8.819 c.67.1.3 34411 2fyfA 398 9.058 1fxlA 167 9.105 d.58.7.1,d.58.7.1 39183,39184 2hi0A 240 10.04 2ig7A 401 10.18 1tyhA 248 10.29 a.132.1.3 107458 1rcwA 231 10.96 a.132.1.4 97299 1u69A 163 11.51 d.32.1.7 107699 2pkeA 251 11.86 2hp0A 466 12.57 1p3wA 404 12.61 c.67.1.3 87752 1us0A 316 12.67 c.1.7.1 99850 1h1yA 228 13.50 c.1.2.2 76506 1k3eA 156 13.54 d.198.1.1 68103 2hszA 243 13.73 c.108.1.6 136726 2ho1A 252 14.39 2q4eA 362 15.29 2bptA 861 15.73 a.118.1.1 128951 1vjoA 393 15.88 c.67.1.3 100827 1in4A 334 17.31 a.4.5.11,c.37.1.20 62597,62598 2etxA 209 17.42 2fdrA 229 17.97 c.108.1.6 133319 2eu8A 216 18.62 2anrA 178 20.31 2pujA 286 20.52 2d2rA 245 20.63 2dgmA 466 20.93 c.67.1.6 131508 3caiA 406 21.07 1zejA 293 21.31 2rjoA 332 22.00 2dgkA 452 22.42 1xi9A 406 23.07 c.67.1.1 115355 1dceA 567 23.10 a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 1l0bA 229 25.93 c.15.1.3,c.15.1.3 73391,73392 2p4fA 299 26.14 3broA 141 26.70 1yakA 263 27.95 a.132.1.3 122833 1ymkA 175 29.01 c.46.1.1 123699 1nw1A 429 29.43 d.144.1.8 86286 2z0qA 346 30.55 2qcxA 263 31.98 2graA 277 31.98 2czlA 272 33.81 c.94.1.1 131055 1pmmA 466 33.93 c.67.1.6 94901 1yjsA 419 34.01 c.67.1.4 123461 1c4kA 730 34.38 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1ya0A 497 36.00 a.118.8.1 122785 2rhsA 294 36.16 3cs3A 277 36.53 4tmkA 213 36.93 c.37.1.1 31930 2glxA 332 37.73 1n97A 389 39.56 a.104.1.1 80335 1jtvA 327 39.64 c.2.1.2 84230 1ecrA 309 39.94 e.2.1.1 42678 3bzbA 281 40.05 2i06A 309 41.13 2d1eA 248 41.36 1bykA 255 41.81 c.93.1.1 35706 2dtjA 178 42.39 1hlvA 131 43.62 a.4.1.7,a.4.1.7 65854,65855 1musA 477 44.14 c.55.3.4 79494 1rtwA 220 44.43 a.132.1.3 97823 1n45A 233 44.56 a.132.1.1 79981 2hmaA 376 45.22 1qz9A 416 46.40 c.67.1.3 96621 1f07A 321 49.69 c.1.16.3 59560 1txdA 385 50.70 a.87.1.1,b.55.1.1 107422,107423 1t3iA 420 51.02 c.67.1.3 106354 2q40A 367 51.82 e.50.1.1 139814 3bhpA 60 51.86 2fbhA 146 51.95 a.4.5.28 133245 1js3A 486 52.62 c.67.1.6 67215 1z3xA 238 53.85 a.118.1.22,a.261.1.1 124416,124417 1kl1A 419 56.12 c.67.1.4 72663 1vjeA 166 56.13 d.185.1.2 100807 2hufA 393 56.91 3b9pA 297 57.40 3c2bA 221 58.02 1xnfA 275 60.07 a.118.8.1 115580 2okcA 445 60.12 2ah5A 210 61.07 c.108.1.6 126742 2v82A 212 61.08 1t15A 214 61.19 c.15.1.3,c.15.1.3 99067,99068 1xngA 268 62.25 c.26.2.1 122186 3bjhA 119 62.63 2qfjA 216 66.12 1nrjB 218 66.14 c.37.1.8 86125 1dqeA 137 66.36 a.39.2.1 17388 1ntyA 311 68.06 a.87.1.1,b.55.1.1 103873,103874 1ek6A 348 68.55 c.2.1.2 29800 2ghpA 292 68.73 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 2j6gA 266 69.03 1jyoA 130 69.10 d.198.1.1 67483 1xfrA 128 70.93 2e18A 257 71.97 2hr3A 147 72.27 a.4.5.28 136678 2h61A 92 73.09 a.39.1.2 136169 2pftA 571 73.23 2bwnA 401 73.37 c.67.1.4 129368 3csuA 310 74.09 c.78.1.1,c.78.1.1 35094,35095 1tujA 123 76.28 3bpvA 138 77.19 2gnxA 365 78.66 1wgzA 510 81.01 1kmqA 184 81.94 c.37.1.8 84412 2g5xA 234 83.37 2ri0A 234 83.57 1jk7A 323 83.75 d.159.1.3 63144 1qsaA 618 84.89 a.118.5.1,d.2.1.6 19182,36988 1c7nA 399 85.19 c.67.1.3 34413 2e7jA 371 85.47 2vh1A 220 85.56 2grmA 317 86.86 2p2sA 336 87.67 1fadA 99 87.75 a.77.1.2 18428 3bcxA 437 87.81 2bfwA 200 88.05 c.87.1.8 128456 1xfiA 367 88.30 e.50.1.1 109584 1xd7A 145 88.61 a.4.5.55 109566 2h2kA 106 89.34 2chgA 226 89.65 1xbyA 216 89.78 c.1.2.3 121846