# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 2.73e-63 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 5.06e-62 d.185.1.1,d.185.1.1 104252,104253 1hr6A 475 7.41e-60 d.185.1.1,d.185.1.1 61164,61165 1ppjB 439 8.09e-60 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 3.74e-57 1kb9A 431 4.78e-56 d.185.1.1,d.185.1.1 77311,77312 1q2lA 939 3.39e-54 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 1.63e-52 2fgeA 995 7.58e-50 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 1.74e-44 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 1.09e-34 1h1yA 228 0.2220 c.1.2.2 76506 2okjA 504 0.3876 1wyuA 438 0.8935 c.67.1.7 121452 1vjoA 393 3.307 c.67.1.3 100827 2hszA 243 4.003 c.108.1.6 136726 1xi9A 406 5.044 c.67.1.1 115355 1us0A 316 5.749 c.1.7.1 99850 2p4fA 299 6.671 1p3wA 404 7.322 c.67.1.3 87752 1tqxA 227 7.689 c.1.2.2 112614 2hufA 393 7.823 2e7jA 371 8.972 1t3iA 420 9.776 c.67.1.3 106354 2awiA 317 10.26 a.35.1.11,a.118.8.4 127435,127436 1fxlA 167 10.72 d.58.7.1,d.58.7.1 39183,39184 2z20A 432 10.93 2gauA 232 11.48 a.4.5.4,b.82.3.2 134894,134895 2douA 376 11.56 2i7qA 402 12.69 1frb 315 12.96 2glxA 332 12.97 2fyfA 398 13.48 2hcfA 234 14.00 c.108.1.6 136333 2dr1A 386 14.51 1wyuB 474 14.64 c.67.1.7 121453 2bkwA 385 14.90 c.67.1.3 128714 2pujA 286 15.59 3b9pA 297 16.14 1kl1A 419 16.70 c.67.1.4 72663 1u69A 163 16.95 d.32.1.7 107699 1fadA 99 17.40 a.77.1.2 18428 1xbyA 216 17.64 c.1.2.3 121846 1j96A 323 18.59 c.1.7.1 71616 1fg7A 356 19.91 c.67.1.1 59819 2yrrA 353 19.93 2pnkA 428 20.70 1yjsA 419 20.70 c.67.1.4 123461 1qwkA 317 21.20 c.1.7.1 96482 2ghpA 292 22.42 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1lc5A 364 25.14 c.67.1.1 73827 1pzgA 331 25.52 c.2.1.5,d.162.1.1 95425,95426 2dtjA 178 25.76 3buvA 326 26.97 1xi3A 215 27.04 c.1.3.1 109601 1m7yA 435 27.21 c.67.1.4 78761 1xnfA 275 27.41 a.118.8.1 115580 2ho1A 252 27.75 1qopA 268 28.93 c.1.2.4 28570 1vp4A 425 29.73 c.67.1.1 113935 1zgdA 312 29.75 2grmA 317 29.76 1uxjA 309 30.02 c.2.1.5,d.162.1.1 108112,108113 1ynuA 473 30.13 c.67.1.4 123762 2dtvA 397 31.27 2q4eA 362 31.40 2jisA 515 32.47 2i88A 191 32.70 2dgkA 452 32.71 1jf9A 408 33.38 c.67.1.3 62931 1yakA 263 33.43 a.132.1.3 122833 1kdoA 227 33.69 c.37.1.1 68478 3c1aA 315 35.99 1nrjB 218 36.60 c.37.1.8 86125 2dztA 248 36.61 3bosA 242 38.03 1ntyA 311 39.22 a.87.1.1,b.55.1.1 103873,103874 1kmqA 184 39.55 c.37.1.8 84412 1mi3A 322 39.67 c.1.7.1 91274 1xeaA 323 40.70 c.2.1.3,d.81.1.5 109572,109573 1twyA 290 42.28 c.94.1.1 112767 2ho3A 325 42.56 2ccqA 99 43.37 d.314.1.1 130252 3caiA 406 45.28 2g2cA 167 45.30 c.57.1.1 134535 1c4kA 730 46.19 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1zejA 293 46.26 3bhwA 209 46.47 2dgmA 466 47.14 c.67.1.6 131508 1te2A 226 47.53 c.108.1.6 106792 1fc4A 401 47.81 c.67.1.4 59760 2ondA 308 47.92 2yviA 111 48.59 1fiqB 350 49.38 d.87.2.1,d.145.1.3 40229,41760 2vg0A 227 49.46 2bfwA 200 50.07 c.87.1.8 128456 1tltA 319 50.61 c.2.1.3,d.81.1.5 107135,107136 1brwA 433 50.71 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1zybA 232 51.23 a.4.5.4,b.82.3.2 125815,125816 2ekcA 262 51.56 1gdeA 389 51.60 c.67.1.1 60456 1rd5A 262 52.31 c.1.2.4 111772 1rtwA 220 52.55 a.132.1.3 97823 1s1pA 331 53.27 c.1.7.1 98350 1lldA 319 53.49 c.2.1.5,d.162.1.1 30177,42144 1hw6A 278 53.76 c.1.7.1 61296 2lhbA 149 53.77 a.1.1.2 15597 3caxA 369 54.58 1zl0A 311 56.06 c.8.10.1,c.23.16.7 125231,125232 1js3A 486 56.62 c.67.1.6 67215 1a0iA 348 56.72 b.40.4.6,d.142.2.1 25363,41577 1kmkA 406 58.05 c.67.1.3 68696 1yozA 116 59.14 a.253.1.1 123796 2ao0A 324 59.33 1zzkA 82 59.36 d.51.1.1 125909 2graA 277 60.05 1of1A 376 61.35 c.37.1.1 103924 2nuwA 288 61.42 3b5oA 244 61.57 1pmmA 466 61.64 c.67.1.6 94901 1vkpA 383 61.66 d.126.1.6 108686 1c7nA 399 61.98 c.67.1.3 34413 2z5kA 890 63.14 1wstA 417 65.02 c.67.1.1 121244 1p6xA 334 65.88 c.37.1.1 94195 1j1iA 296 66.24 c.69.1.10 83977 2es4D 332 69.33 1qz9A 416 69.34 c.67.1.3 96621 1d5tA 433 70.77 c.3.1.3,d.16.1.6 30422,37986 1mx3A 347 71.95 c.2.1.4,c.23.12.1 79638,79639 1gtvA 214 72.90 c.37.1.1 70537 2qmaA 497 72.95 1hynP 379 73.96 d.112.1.2 61408 2r2iA 198 74.16 3c5iA 369 74.33 2qfjA 216 75.33 1l5aA 436 76.50 c.43.1.2,c.43.1.2 75923,75924 2gb3A 409 80.53 c.67.1.1 134903 2pftA 571 80.76 3ceaA 346 80.78 2i6eA 301 81.10 2hi0A 240 81.58 2viaA 405 81.78 1uteA 313 81.92 d.159.1.1 42078 1lk9A 448 81.93 c.67.1.1 78057 2p2sA 336 82.70 1jk7A 323 83.12 d.159.1.3 63144 1w3iA 293 83.26 c.1.10.1 109152 2q6mA 212 83.86 137lA 164 84.57 d.2.1.3 36791 2d0iA 333 84.61 2etxA 209 84.70 2jg0A 535 84.81 2grjA 192 86.06 1tyhA 248 86.15 a.132.1.3 107458 1rydA 387 86.94 c.2.1.3,d.81.1.5 118801,118802 1h6dA 433 87.96 c.2.1.3,d.81.1.5 65656,65657 2nr3A 183 88.71 1t0bA 252 88.76 c.23.16.6 106199 2pkeA 251 88.86 1ff9A 450 89.09 c.2.1.3,d.81.1.2 30039,39954 3bwdD 182 89.18 1aw2A 256 89.24 c.1.1.1 28523