# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 2.16e-34 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 2.12e-33 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 3.20e-33 d.185.1.1,d.185.1.1 104254,104255 1hr6A 475 1.07e-31 d.185.1.1,d.185.1.1 61164,61165 3cx5A 431 6.97e-29 1kb9A 431 2.28e-28 d.185.1.1,d.185.1.1 77311,77312 1q2lA 939 2.92e-25 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 8.42e-25 1kb9B 352 5.53e-20 d.185.1.1,d.185.1.1 77313,77314 2fgeA 995 4.27e-19 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 3cx5B 352 3.54e-17 1qsaA 618 2.308 a.118.5.1,d.2.1.6 19182,36988 1hynP 379 5.680 d.112.1.2 61408 2z0mA 337 7.500 1ouvA 273 8.903 a.118.18.1 93570 1ur3M 319 8.963 c.1.7.1 99806 1yfsA 465 9.246 a.203.1.1,d.104.1.1 123088,123089 2dy1A 665 10.12 2p4fA 299 10.58 1a53A 247 11.54 c.1.2.4 28564 2cxnA 557 12.06 2c8mA 262 12.10 1oyzA 280 12.42 a.118.1.16 93775 1v5xA 203 15.42 c.1.2.4 100377 1a53 247 15.74 2bm0A 691 16.41 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 1piiA 452 18.42 c.1.2.4,c.1.2.4 28559,28563 1bw0A 416 19.04 c.67.1.1 34385 1dceB 331 20.93 a.102.4.3 18872 2q4wA 524 21.74 2p0lA 288 21.97 2ppqA 322 22.42 1tw3A 360 22.84 a.4.5.29,c.66.1.12 107373,107374 1pii 452 23.34 2es4D 332 23.85 3c24A 286 24.62 1qzzA 374 24.75 a.4.5.29,c.66.1.12 96719,96720 1mzhA 225 25.06 c.1.10.1 79698 2ihiA 395 25.27 1xkyA 301 25.73 c.1.10.1 122094 1zejA 293 26.30 1korA 400 26.50 c.26.2.1,d.210.1.1 72824,72825 2c1mA 424 26.64 2grmA 317 26.94 2gauA 232 27.15 a.4.5.4,b.82.3.2 134894,134895 2d1cA 496 27.82 1cuk 203 29.71 2ie4A 589 29.73 a.118.1.2 137291 3bk2A 562 30.20 2r7jA 317 30.66 1g8mA 593 30.96 c.24.1.3,c.97.1.4 60371,60372 1cukA 203 32.61 a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1t06A 235 34.20 a.118.1.17 106194 3craA 265 36.29 2jhnA 295 36.31 1zgdA 312 38.03 2d0bA 310 38.51 1pyfA 312 38.58 c.1.7.1 95334 2qacA 146 40.38 3b5vA 248 40.91 2anrA 178 41.34 2jgqA 233 42.24 2bg5A 324 43.22 1j98A 157 43.64 d.185.1.2 62755 1b89A 449 44.05 a.118.1.3 19138 2gekA 406 44.18 1ynpA 317 44.44 1m15A 357 45.41 a.83.1.1,d.128.1.2 78368,78369 1us0A 316 45.56 c.1.7.1 99850 1l9vA 317 45.95 d.13.2.1,d.216.1.1 73760,73761 1dj0A 264 46.12 d.265.1.1 90337 1w1oA 534 46.98 d.58.32.4,d.145.1.1 109071,109072 1vcvA 226 47.23 c.1.10.1 119988 1g99A 408 47.77 c.55.1.2,c.55.1.2 33457,33458 2ojpA 292 47.80 1zybA 232 48.32 a.4.5.4,b.82.3.2 125815,125816 1u0fA 564 49.26 c.80.1.2 112912 2oxcA 230 49.32 2oap1 511 49.38 2olpA 152 49.61 3c5iA 369 50.17 1k2pA 263 50.28 d.144.1.7 72012 1twfK 120 50.60 d.74.3.2 112736 2exrA 524 51.25 1a6q 382 53.13 1x54A 434 56.76 2ehhA 294 58.25 1io2A 213 59.35 c.55.3.1 62612 2gvkA 317 59.86 d.58.4.14 135782 1vl2A 421 61.70 c.26.2.1,d.210.1.1 108708,108709 2oemA 413 61.82 2b6cA 220 62.77 a.118.1.17 127983 1ee4A 423 62.85 a.118.1.1 19128 2i57A 438 64.27 3d0cA 314 65.11 2oz8A 389 66.52 2cw6A 298 68.08 1k92A 455 68.47 c.26.2.1,d.210.1.1 68325,68326 1vb3A 428 68.90 c.79.1.1 119942 1y8cA 246 69.37 c.66.1.43 116563 1pz1A 333 70.05 c.1.7.1 95390 2dtjA 178 70.56 2ahrA 259 71.36 a.100.1.10,c.2.1.6 126775,126776 1kidA 203 72.01 c.8.5.1 30771 2pywA 420 72.63 1ihuA 589 72.68 c.37.1.10,c.37.1.10 62394,62395 1v73A 342 73.69 2ffiA 288 74.55 c.1.9.15 133385 1vliA 385 75.02 b.85.1.1,c.1.10.6 108830,108831 1ub3A 220 75.46 c.1.10.1 88395 1o5zA 442 75.53 c.59.1.2,c.72.2.2 92530,92531 1vqrA 297 76.08 a.211.1.3 114015 2pulA 397 79.57 2awiA 317 79.60 a.35.1.11,a.118.8.4 127435,127436 3cdlA 203 80.00 2atsA 292 82.75 c.1.10.1 127306 3cyjA 372 82.93 2zcwA 202 83.98 1o5kA 306 84.09 c.1.10.1 92504 1a4sA 503 84.49 c.82.1.1 35361 2b1pA 355 85.64 d.144.1.7 127672 2is6A 680 86.18 2h1rA 299 86.41 1kid 203 87.19